Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10255 g10255.t4 isoform g10255.t4 8551553 8553329
chr_1 g10255 g10255.t4 exon g10255.t4.exon1 8551553 8552543
chr_1 g10255 g10255.t4 cds g10255.t4.CDS1 8551555 8552543
chr_1 g10255 g10255.t4 exon g10255.t4.exon2 8552594 8552819
chr_1 g10255 g10255.t4 cds g10255.t4.CDS2 8552594 8552819
chr_1 g10255 g10255.t4 exon g10255.t4.exon3 8553255 8553329
chr_1 g10255 g10255.t4 cds g10255.t4.CDS3 8553255 8553329
chr_1 g10255 g10255.t4 TSS g10255.t4 8553435 8553435
chr_1 g10255 g10255.t4 TTS g10255.t4 NA NA

Sequences

>g10255.t4 Gene=g10255 Length=1292
ATGTTAAAGTTCTATACAAAACGTGATGTCGACAAGCATGTCTCTCATATGTTTCAAAAA
CTTAGCGAAAAAGAGCGGTCAAGTCGTGGTTTGCATATTGCAAGATGCTATGTTAAGGTA
AACGAATGGGATCTTGCTCGAGATTGGTTACAACGATATCTAGACACAAAACAGGATGAT
CCTGTAGCTCACAGACTTATGGCCGAAATATATGAGCGTCTTCATAAAACAGAAGAAGCC
ATTACATCATATCAGCGCTCATATAATTTAAATAACAAACAAAATGATATCATTAAACAT
GTCTGCCGGCTTTATCTGCTTAATGGTGGTTGGTCTTCATGCCCTGGAAAAGTTAAATAC
TGGTGTGAATTAGCAGAAAATGAAAATATTCGCGACGAGAATATAGCTGATCTCCAATCA
AAAATTGGAGTAAAAGTCACCGCCAGTGGTAGTACAAGCAGTAACAGTAACTTGAAGGAA
CGAAAAAGTGATGTAGGCAAAATTCGAACAGAGAAAAAACTACAACATGAACTTTCATCA
TCATTTAATGAAGAGTTTAATAATAATTCTCAAAATGGATATACTGATGACGAAATTTTT
CACAATGCTTCATCTAGTTCTTTTAGAACTACACAAATGTCATTTGCACCAATGCCAAAT
TACAATGAAAAGTTTGCAGATGTTGAAGATTTGATTCGAAAGCTTTCTGATTTGGTAATT
TCTGTAAAGGAAGATGTTCTATGTGTTCGAAATGATATAACAAGTTTGAGGGACGATATT
CTTAATATTCGTGGTGATATAACTGATTTGAGTGTTAACAAAGATGCAACTACAGCAAAG
GCAATCATTGATGTCAATAAATCTATTGAAGATCTTACTTGGAATGTGAGTTGCTTGATG
AATATTTTTCCAAGCGCACCTGGGCCTGTTTCACTTCCAACAAATATAAGATTTCCACCT
AATCAATTGCCCCCGCAATTTAATCAAATGTATAACACGGCTTATCCAATTTATCCACCT
ATACGTCCACAATTGCCACCACATTTACAATATAATGATCCTCTTGGAATGAATTTGATA
ATGAATGCTGCTGCTGCTGCCGCAAATTATGGTTCTCCACTCATTGCTTCTCCACAACAA
CCTCCACCTCCGCCTCAACCGCAACAGCCTATTCCACAACAACAAAATATTTCACCAGCA
ATCACAATTCAAAATGGGCAGAAATCGTCTTTAATGGAAGCTTTAAATACGCCATCAGTT
TTAAATACATGGAATAATACATATAATGCAGC

>g10255.t4 Gene=g10255 Length=430
MLKFYTKRDVDKHVSHMFQKLSEKERSSRGLHIARCYVKVNEWDLARDWLQRYLDTKQDD
PVAHRLMAEIYERLHKTEEAITSYQRSYNLNNKQNDIIKHVCRLYLLNGGWSSCPGKVKY
WCELAENENIRDENIADLQSKIGVKVTASGSTSSNSNLKERKSDVGKIRTEKKLQHELSS
SFNEEFNNNSQNGYTDDEIFHNASSSSFRTTQMSFAPMPNYNEKFADVEDLIRKLSDLVI
SVKEDVLCVRNDITSLRDDILNIRGDITDLSVNKDATTAKAIIDVNKSIEDLTWNVSCLM
NIFPSAPGPVSLPTNIRFPPNQLPPQFNQMYNTAYPIYPPIRPQLPPHLQYNDPLGMNLI
MNAAAAAANYGSPLIASPQQPPPPPQPQQPIPQQQNISPAITIQNGQKSSLMEALNTPSV
LNTWNNTYNA

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g10255.t4 Gene3D G3DSA:1.25.40.10 - 3 144 0.0000000
1 g10255.t4 Pfam PF14559 Tetratricopeptide repeat 28 70 0.0000004
4 g10255.t4 ProSiteProfiles PS50293 TPR repeat region circular profile. 27 94 11.0120000
2 g10255.t4 SUPERFAMILY SSF48452 TPR-like 32 111 0.0000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed