General information for g10260.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10260 is located on chr_1: 8562644..8568181 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10260 | g10260.t4 | isoform | g10260.t4 | 8562644 | 8568181 |
| chr_1 | g10260 | g10260.t4 | exon | g10260.t4.exon1 | 8562644 | 8562716 |
| chr_1 | g10260 | g10260.t4 | exon | g10260.t4.exon2 | 8564004 | 8564577 |
| chr_1 | g10260 | g10260.t4 | exon | g10260.t4.exon3 | 8564640 | 8564977 |
| chr_1 | g10260 | g10260.t4 | exon | g10260.t4.exon4 | 8565050 | 8565176 |
| chr_1 | g10260 | g10260.t4 | exon | g10260.t4.exon5 | 8565241 | 8565550 |
| chr_1 | g10260 | g10260.t4 | exon | g10260.t4.exon6 | 8567222 | 8567988 |
| chr_1 | g10260 | g10260.t4 | cds | g10260.t4.CDS1 | 8567443 | 8567751 |
| chr_1 | g10260 | g10260.t4 | exon | g10260.t4.exon7 | 8568046 | 8568181 |
| chr_1 | g10260 | g10260.t4 | TSS | g10260.t4 | NA | NA |
| chr_1 | g10260 | g10260.t4 | TTS | g10260.t4 | NA | NA |
Sequences
>g10260.t4 Gene=g10260 Length=2325
AAGAATAAAATGTTAATAAAGAAATTGAAATAATATTTTCGTTATATAACAAAGTCTATT
TATTTAAAATTTTTATTTAATATGCCACTTTGATTTAATCAAATTTATAATTTTCTACAA
TTTTATCAAACATTGGTTTACAAGCAAATTTAGCTTTTAATTTGAAACATAAAAGAAAGA
CTCCAGAAAGCTTTCTATGAAGTGAATAAATTTCTTCGGGTGGTGGACATAATCTTTGCT
CAATCATGACTGGTACTAGATTTGCAATTCTCTTTGTAGTTTGTTGTGCTCCAAAATCAA
ATTCTTTAACATTAAACACCTCACCCAAAATCATCACTGCATCAACATGTGCCTTTTGCA
TAATTTGCGTTTCATGACCTGTTAAAAATCCCATATCAATACTCAATCGACGAACAGTTT
CTCGATCATTTTCTGTAGCTGCTATGATAATTCTCAAATAGTTGTCAATAAATGACTTTG
TATAAAATCTGGTGGCGCCAAAATCAATCAACATCAATCGTTGTGTTGGTTCATCATAAA
GAAAATTTGACCAATTTGGATCAGTTTGCATGCATCTTATTTCAAAAAGTTCGAGTAAGC
AAAGTTGCATTACCATTTTTGCGATATGATTACGATGTTCTTTACTATTGAAACAAGCAT
CCATCGGAACACCGGGAACAAACTCAGTAGTCAAAACTCGAGAAGTTGTAAGATCATTAA
TAACACGTGGTACTTTAAATTGTGGATAGTTTTTAATCATTTCTGCAAAATTTGTAGTGA
ATTCAGCTTCACGAATATAATCGACTTCCCAAGCAAGCTCTCGCTTTGCCACTTTGACGA
TACTATCAATAAATATTCCGGGTGGAAATACATTCCATACTTTAAGCATCGACACAAGAT
TATCAATATCGCTTTCAATACTCTGTGCTACTCCTGGATATTGAATCTTAATTGCTACCT
CAGTATTATCATATAATATTCCCTTATTTACTTGACCAATTGAGGCAGCAGCAAATGGTT
TATCATCAAAACTGGCATATTTCGATCGCCAATCTTTACCTAGTTCCTCAGTCATTACTT
TCTCCACTTGAAAGTTTGGCATATAATCAGCTGCTTGTCTTACACGATCAAATGCCTGAA
TTAATTGTGGTGACACAACATTGGTGTCTTGAATACTTAAAATTTGACCTAATTTTAGAG
CAGCTCCTCTAACTTTACATAATGTATCAACAATTCTTTCTGAATTTTGCGGACTTAAAA
AGGCATCGCGAACATTTGTTGAACCACCAAGACCAAGAGCTCCTTTAGTCAATTCTCCGA
TTGTTCCAATTCCTAAGCCGGCAAATAACTGACCAAATGAAGCAGCTCGACCTATTCTTG
ATGAAGGTACTGTTCTCTGCTTTGCAACAACTTTAAGCTATGGTACTCCTTTATTTTCTG
TAGCAGAAGAATTCGGCTTTTTATCGTATTCAGTAATAAATTTCATCATGTCGTCAACCT
GTTTTTCATCTTCAACAGTTTTGTTCGGTTGAACAGAAGACATAGCATCAACTATATTAT
CCGGTTTTGATATAGATTCATTCTCCGGATGAACGATAATGTCTTTATTCGGTTGCAAAA
TGATTTCTTTTTTCGGTTCTAAAATGATTTCTTTACTCGGTTCTATGATAAGAGCTTTTT
CATTTTTAGATTTTTTCGGTTTAAAATTTTCATCAATACTTAAATTTACTTCACGTATTT
TATTATGTTCAGCAAGTAAGTTTTCTAATTCTTTTAATGTTACCGAAGCGATATCTAAAT
TTTGGATATTTTTTATTGTAGAGTATGATTTTGATTTCGAGTCTTCTGACACTTCAATTA
CACCAATTGGTTCAGAGCTTCTGCCATTGGCCATATATTGCCTTAAACCTTCTACAACTA
CTGAACCTCTACCAAAAGTTTCTTTTATATAGTGATTAACATTTTGAAATTCTTGAGCTG
GATTTTCAATTATTTTTTTAGTACATTCCTGAGTTTGTTTGACATTTGTTTCAATTGCAT
CACGAACTGATGAATGAGACCATATATGCTTTAAATATTGTTCTTGTGATTTGATCGATG
CACTAGCAACGAGTTGTGCTCCACGAAGAATTCCAATCAAATCAGATGAATATTTACTCA
TTTTAAATTTTGAACTTTCTAGATATGACAGAACTTTATATTCGATATTATAAAAGCATA
ACAATGTTATCTCCTTTAATTCACAGTTTTTTCACTCAAATTAAAGAATTTTTTGAAATA
AATAATATTGTGTAAATCGTATCTAAATTTCCACTGTATCATACT
>g10260.t4 Gene=g10260 Length=102
MISLLGSMIRAFSFLDFFGLKFSSILKFTSRILLCSASKFSNSFNVTEAISKFWIFFIVE
YDFDFESSDTSITPIGSELLPLAIYCLKPSTTTEPLPKVSFI
Protein features from InterProScan
No InterPro annotations for this transcript.
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
