General information for g10273.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Polycomb group RING finger protein 3.
Parent gene
- The parent gene g10273 is located on chr_1: 8605346..8607395 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10273 | g10273.t2 | TTS | g10273.t2 | 8604051 | 8604051 |
| chr_1 | g10273 | g10273.t2 | isoform | g10273.t2 | 8604274 | 8605346 |
| chr_1 | g10273 | g10273.t2 | exon | g10273.t2.exon1 | 8604274 | 8604399 |
| chr_1 | g10273 | g10273.t2 | cds | g10273.t2.CDS1 | 8604274 | 8604399 |
| chr_1 | g10273 | g10273.t2 | exon | g10273.t2.exon2 | 8604469 | 8604978 |
| chr_1 | g10273 | g10273.t2 | cds | g10273.t2.CDS2 | 8604469 | 8604777 |
| chr_1 | g10273 | g10273.t2 | exon | g10273.t2.exon3 | 8605241 | 8605346 |
| chr_1 | g10273 | g10273.t2 | TSS | g10273.t2 | 8605421 | 8605421 |
Sequences
>g10273.t2 Gene=g10273 Length=742
ATGGAGAAAAAGATCAAATTAAAGACATTAAATCCATTCATAAGTTGTAAAATATGCAGA
GGATATTTAATTGATGCAACAACCATAGTAGAATGCTTGCATACGTTTTGTAAAAGTTGT
TTAGTGAAACATTTGGAAGAATCACCAAACAATGCATGTCCTGATTGCAATTTAGTAATT
CATCAAAGTCACCCTCTTCAGTATATAAGTCATGATCGCACAATGCAAGATATCGTTTAT
AAACTCGTGCCCAATTTACAAGATAGTAAGTAAATCCAATATTTTGTAATATATCTCTCA
TAGAAATATGTTTTTTGTAGATGAAATAAATCGAGAGCGAGCATTTTATAAAGCAAGAAA
TCTTCCATGTCCAAAAGACATACCACAAGACAACAAAGACAATGATGATATTGAATCAAA
ATTGAATGAAGCACACCAAGAATCAGATTACCATCGAATGGACGAACAAGTTAACTTATG
TCTAGAATGCAGCTCAAGTAGTAACTTAAAGAATTTAAAGAGACGTTTTATTCGATGCAG
TTCACAAGCTACAATCACACAATTGAAAAAATTTGTCGCTAAGAAAGTATTAAATGGAAT
AGAAAAATATAGAGAGATTGATATTTTATGTAATGATGAATTGCTAGGCAAGGATCATAC
ACTTAAATTTGTGTACGTTACTCGTTGGAGATTCAAAGACCCACCACTTAGACTTCAATA
TAGAACGACAATTTTCGACTAG
>g10273.t2 Gene=g10273 Length=144
MFFVDEINRERAFYKARNLPCPKDIPQDNKDNDDIESKLNEAHQESDYHRMDEQVNLCLE
CSSSSNLKNLKRRFIRCSSQATITQLKKFVAKKVLNGIEKYREIDILCNDELLGKDHTLK
FVYVTRWRFKDPPLRLQYRTTIFD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10273.t2 | CDD | cd17083 | RAWUL_PCGF3 | 54 | 139 | 0 |
| 4 | g10273.t2 | Gene3D | G3DSA:3.10.20.90 | - | 35 | 141 | 0 |
| 2 | g10273.t2 | PANTHER | PTHR45893:SF3 | POLYCOMB GROUP RING FINGER PROTEIN 3 | 5 | 141 | 0 |
| 3 | g10273.t2 | PANTHER | PTHR45893 | POLYCOMB GROUP RING FINGER PROTEIN | 5 | 141 | 0 |
| 1 | g10273.t2 | Pfam | PF16207 | RAWUL domain RING finger- and WD40-associated ubiquitin-like | 73 | 139 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
