General information for g10274.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Succinate–CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial .
Parent gene
- The parent gene g10274 is located on chr_1: 8607180..8608301 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10274 | g10274.t3 | TSS | g10274.t3 | 8605526 | 8605526 |
| chr_1 | g10274 | g10274.t3 | isoform | g10274.t3 | 8605625 | 8606850 |
| chr_1 | g10274 | g10274.t3 | exon | g10274.t3.exon1 | 8605625 | 8605658 |
| chr_1 | g10274 | g10274.t3 | cds | g10274.t3.CDS1 | 8605625 | 8605658 |
| chr_1 | g10274 | g10274.t3 | exon | g10274.t3.exon2 | 8606258 | 8606481 |
| chr_1 | g10274 | g10274.t3 | cds | g10274.t3.CDS2 | 8606258 | 8606481 |
| chr_1 | g10274 | g10274.t3 | exon | g10274.t3.exon3 | 8606535 | 8606765 |
| chr_1 | g10274 | g10274.t3 | cds | g10274.t3.CDS3 | 8606535 | 8606765 |
| chr_1 | g10274 | g10274.t3 | exon | g10274.t3.exon4 | 8606837 | 8606850 |
| chr_1 | g10274 | g10274.t3 | cds | g10274.t3.CDS4 | 8606837 | 8606848 |
| chr_1 | g10274 | g10274.t3 | TTS | g10274.t3 | 8607633 | 8607633 |
Sequences
>g10274.t3 Gene=g10274 Length=503
ATGGCTTCATCGAGAATGTTGTTGAAAGTGAAAGATGGTTTACAGCTGGGAAAATTCGGC
GTACGTTTTGCAAGTTATGAAGCAACGAGAAAGAATTTGAGACTTACGAAAGATACAAAA
GTAATCTGTCAAGGCTTTACCGGAAAACAGGGCACTTTCCATTCACAACAAGCTCTCGAA
TATGGAACAAAACTTATCGGAGGTGTCAGCCCAGGCAAAGGAGGCCGCACTCATTTGGAT
TTGCCAGTTTTTAATACTGTTGCTGAAGCCAGACAAGCGACTGGAGCGGAAGCAACTGTA
ATTTATGTACCACCTCCAGGCGCCGCGAAAGCCATTATGGAAGCTCTTGATGCAGAAATG
CCTTTAATTGTAGCAATCACTGAAGGAATTCCTCAACACGACATGGTGAAAGTTAAGAAT
CGTCTATTGAATCAAGATAAATCACGATTAGTTGGACCTAATTGTCCTGGGATCATTGCT
CCAGAAGCTTGTAAAATTGGCAT
>g10274.t3 Gene=g10274 Length=167
MASSRMLLKVKDGLQLGKFGVRFASYEATRKNLRLTKDTKVICQGFTGKQGTFHSQQALE
YGTKLIGGVSPGKGGRTHLDLPVFNTVAEARQATGAEATVIYVPPPGAAKAIMEALDAEM
PLIVAITEGIPQHDMVKVKNRLLNQDKSRLVGPNCPGIIAPEACKIG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10274.t3 | Gene3D | G3DSA:3.40.50.720 | - | 33 | 154 | 0 |
| 2 | g10274.t3 | PANTHER | PTHR11117:SF2 | SUCCINATE–COA LIGASE [ADP/GDP-FORMING] SUBUNIT ALPHA, MITOCHONDRIAL | 21 | 167 | 0 |
| 3 | g10274.t3 | PANTHER | PTHR11117 | SUCCINYL-COA LIGASE SUBUNIT ALPHA | 21 | 167 | 0 |
| 1 | g10274.t3 | Pfam | PF02629 | CoA binding domain | 36 | 129 | 0 |
| 5 | g10274.t3 | SMART | SM00881 | CoA_binding_2 | 35 | 130 | 0 |
| 4 | g10274.t3 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 26 | 153 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
