General information for g10275.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Dihydropteridine reductase.
Parent gene
- The parent gene g10275 is located on chr_1: 8608748..8609419 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10275 | g10275.t1 | TTS | g10275.t1 | 8608142 | 8608142 |
| chr_1 | g10275 | g10275.t1 | isoform | g10275.t1 | 8608301 | 8609350 |
| chr_1 | g10275 | g10275.t1 | exon | g10275.t1.exon1 | 8608301 | 8608621 |
| chr_1 | g10275 | g10275.t1 | cds | g10275.t1.CDS1 | 8608301 | 8608621 |
| chr_1 | g10275 | g10275.t1 | exon | g10275.t1.exon2 | 8608691 | 8608999 |
| chr_1 | g10275 | g10275.t1 | cds | g10275.t1.CDS2 | 8608691 | 8608999 |
| chr_1 | g10275 | g10275.t1 | exon | g10275.t1.exon3 | 8609270 | 8609350 |
| chr_1 | g10275 | g10275.t1 | cds | g10275.t1.CDS3 | 8609270 | 8609350 |
| chr_1 | g10275 | g10275.t1 | TSS | g10275.t1 | 8609431 | 8609431 |
Sequences
>g10275.t1 Gene=g10275 Length=711
ATGTCCCGAAAAGTTTTAATCTATGGTGGCCGTGGTGCATTAGGATCAAAATTGGTCGAA
TATTTCAAAGCTAAAAACTTTTGGGTCGGTTCAATCGATTTAGTTGAGAATCCTGAAGCT
GATGCCAATATTTTGGTGAAACGGGATGCTGATTTCGTTGAGCAAGAAATACAAGTATTG
GAAGCTGTTAAGAATGTTTTGAATGAAGACAAGTTAGAAGCTGTCGTTTGTGTAGCAGGT
GGATGGGCAGGTGGAAATGCATCAAAAGACTTGGCAAAAAATACAGACTTAATGATTAAG
CAATCAGTATGGAGTTCAATAATTTCTGCATCCGTTGCATCTCATTGCCTTAAAGAAGGT
GGAATTTTAACATTGACCGGTGCAAAACCTGCATTAACAGCAACACCTGGAATGATTGGC
TATGGCCTTGCAAAAGCTGCAGTTCATCAACTCACAAAATCACTAGCTGCAAGCGGCTCT
GGTCTACCGGAAAATTCATTTGTTGCTTCTATTTTGCCAATAACATTAGATACTCCAATG
AACAGAAAATGGATGCCTAATGCAGATTTCAGCACATGGACTCCTTTAGATTTTGTTGCT
GAACTCTTTCACAAATGGATCACATCACCTAGTGACCGTCCAAGCAAGAATGGTTCATTG
CTGCAACTTGTAACAAAAGATTCAAAAACTGAACTTATTGTTGCAGAATAA
>g10275.t1 Gene=g10275 Length=236
MSRKVLIYGGRGALGSKLVEYFKAKNFWVGSIDLVENPEADANILVKRDADFVEQEIQVL
EAVKNVLNEDKLEAVVCVAGGWAGGNASKDLAKNTDLMIKQSVWSSIISASVASHCLKEG
GILTLTGAKPALTATPGMIGYGLAKAAVHQLTKSLAASGSGLPENSFVASILPITLDTPM
NRKWMPNADFSTWTPLDFVAELFHKWITSPSDRPSKNGSLLQLVTKDSKTELIVAE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10275.t1 | CDD | cd05334 | DHPR_SDR_c_like | 2 | 225 | 1.07488E-103 |
| 5 | g10275.t1 | Coils | Coil | Coil | 50 | 70 | - |
| 4 | g10275.t1 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 236 | 1.6E-41 |
| 2 | g10275.t1 | PANTHER | PTHR15104 | DIHYDROPTERIDINE REDUCTASE | 2 | 235 | 8.6E-103 |
| 1 | g10275.t1 | Pfam | PF13561 | Enoyl-(Acyl carrier protein) reductase | 53 | 184 | 8.4E-9 |
| 3 | g10275.t1 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 2 | 212 | 4.23E-32 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K00357 (dihydropteridine reductase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
