General information for g10275.t56
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dihydropteridine reductase.
Parent gene
- The parent gene g10275 is located on chr_1: 8608748..8609419 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10275 | g10275.t56 | TTS | g10275.t56 | 8608142 | 8608142 |
| chr_1 | g10275 | g10275.t56 | isoform | g10275.t56 | 8608301 | 8609350 |
| chr_1 | g10275 | g10275.t56 | exon | g10275.t56.exon1 | 8608301 | 8608589 |
| chr_1 | g10275 | g10275.t56 | cds | g10275.t56.CDS1 | 8608546 | 8608589 |
| chr_1 | g10275 | g10275.t56 | exon | g10275.t56.exon2 | 8608702 | 8608999 |
| chr_1 | g10275 | g10275.t56 | cds | g10275.t56.CDS2 | 8608702 | 8608999 |
| chr_1 | g10275 | g10275.t56 | exon | g10275.t56.exon3 | 8609270 | 8609350 |
| chr_1 | g10275 | g10275.t56 | cds | g10275.t56.CDS3 | 8609270 | 8609350 |
| chr_1 | g10275 | g10275.t56 | TSS | g10275.t56 | 8609431 | 8609431 |
Sequences
>g10275.t56 Gene=g10275 Length=668
ATGTCCCGAAAAGTTTTAATCTATGGTGGCCGTGGTGCATTAGGATCAAAATTGGTCGAA
TATTTCAAAGCTAAAAACTTTTGGGTCGGTTCAATCGATTTAGTTGAGAATCCTGAAGCT
GATGCCAATATTTTGGTGAAACGGGATGCTGATTTCGTTGAGCAAGAAATACAAGTATTG
GAAGCTGTTAAGAATGTTTTGAATGAAGACAAGTTAGAAGCTGTCGTTTGTGTAGCAGGT
GGATGGGCAGGTGGAAATGCATCAAAAGACTTGGCAAAAAATACAGACTTAATGATTAAG
CAATCAGTATGGAGTTCAATAATTTCTGCATCCGTTGCATCTCATTGCCTTAAAGAAGGT
GGAATTTTAACATTGACCGTGGCCTTGCAAAAGCTGCAGTTCATCAACTCACAAAATCAC
TAGCTGCAAGCGGCTCTGGTCTACCGGAAAATTCATTTGTTGCTTCTATTTTGCCAATAA
CATTAGATACTCCAATGAACAGAAAATGGATGCCTAATGCAGATTTCAGCACATGGACTC
CTTTAGATTTTGTTGCTGAACTCTTTCACAAATGGATCACATCACCTAGTGACCGTCCAA
GCAAGAATGGTTCATTGCTGCAACTTGTAACAAAAGATTCAAAAACTGAACTTATTGTTG
CAGAATAA
>g10275.t56 Gene=g10275 Length=140
MSRKVLIYGGRGALGSKLVEYFKAKNFWVGSIDLVENPEADANILVKRDADFVEQEIQVL
EAVKNVLNEDKLEAVVCVAGGWAGGNASKDLAKNTDLMIKQSVWSSIISASVASHCLKEG
GILTLTVALQKLQFINSQNH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10275.t56 | Coils | Coil | Coil | 50 | 70 | - |
| 4 | g10275.t56 | Gene3D | G3DSA:3.40.50.720 | - | 2 | 133 | 9.8E-16 |
| 2 | g10275.t56 | PANTHER | PTHR15104 | DIHYDROPTERIDINE REDUCTASE | 2 | 132 | 2.7E-48 |
| 1 | g10275.t56 | Pfam | PF01370 | NAD dependent epimerase/dehydratase family | 5 | 105 | 6.2E-6 |
| 3 | g10275.t56 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 2 | 126 | 6.11E-14 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003824 | catalytic activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed