General information for g10275.t57
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dihydropteridine reductase.
Parent gene
- The parent gene g10275 is located on chr_1: 8608748..8609419 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10275 | g10275.t57 | TTS | g10275.t57 | 8608142 | 8608142 |
| chr_1 | g10275 | g10275.t57 | isoform | g10275.t57 | 8608301 | 8609350 |
| chr_1 | g10275 | g10275.t57 | exon | g10275.t57.exon1 | 8608301 | 8608621 |
| chr_1 | g10275 | g10275.t57 | cds | g10275.t57.CDS1 | 8608301 | 8608621 |
| chr_1 | g10275 | g10275.t57 | exon | g10275.t57.exon2 | 8608691 | 8608830 |
| chr_1 | g10275 | g10275.t57 | cds | g10275.t57.CDS2 | 8608691 | 8608789 |
| chr_1 | g10275 | g10275.t57 | exon | g10275.t57.exon3 | 8608907 | 8608999 |
| chr_1 | g10275 | g10275.t57 | exon | g10275.t57.exon4 | 8609270 | 8609350 |
| chr_1 | g10275 | g10275.t57 | TSS | g10275.t57 | 8609431 | 8609431 |
Sequences
>g10275.t57 Gene=g10275 Length=635
ATGTCCCGAAAAGTTTTAATCTATGGTGGCCGTGGTGCATTAGGATCAAAATTGGTCGAA
TATTTCAAAGCTAAAAACTTTTGGGTCGGTTCAATCGATTTAGTTGAGAATCCTGAAGCT
GATGCCAATATTTTGGTGAAACGGGATGCTGATTTCGTTGAGCAAGAAATACAAGTGGAA
ATGCATCAAAAGACTTGGCAAAAAATACAGACTTAATGATTAAGCAATCAGTATGGAGTT
CAATAATTTCTGCATCCGTTGCATCTCATTGCCTTAAAGAAGGTGGAATTTTAACATTGA
CCGGTGCAAAACCTGCATTAACAGCAACACCTGGAATGATTGGCTATGGCCTTGCAAAAG
CTGCAGTTCATCAACTCACAAAATCACTAGCTGCAAGCGGCTCTGGTCTACCGGAAAATT
CATTTGTTGCTTCTATTTTGCCAATAACATTAGATACTCCAATGAACAGAAAATGGATGC
CTAATGCAGATTTCAGCACATGGACTCCTTTAGATTTTGTTGCTGAACTCTTTCACAAAT
GGATCACATCACCTAGTGACCGTCCAAGCAAGAATGGTTCATTGCTGCAACTTGTAACAA
AAGATTCAAAAACTGAACTTATTGTTGCAGAATAA
>g10275.t57 Gene=g10275 Length=139
MIKQSVWSSIISASVASHCLKEGGILTLTGAKPALTATPGMIGYGLAKAAVHQLTKSLAA
SGSGLPENSFVASILPITLDTPMNRKWMPNADFSTWTPLDFVAELFHKWITSPSDRPSKN
GSLLQLVTKDSKTELIVAE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10275.t57 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 139 | 0 |
| 1 | g10275.t57 | PANTHER | PTHR15104 | DIHYDROPTERIDINE REDUCTASE | 1 | 138 | 0 |
| 2 | g10275.t57 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 2 | 115 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed