General information for g10275.t62
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dihydropteridine reductase.
Parent gene
- The parent gene g10275 is located on chr_1: 8608748..8609419 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10275 | g10275.t62 | TTS | g10275.t62 | 8608142 | 8608142 |
| chr_1 | g10275 | g10275.t62 | isoform | g10275.t62 | 8608301 | 8609350 |
| chr_1 | g10275 | g10275.t62 | exon | g10275.t62.exon1 | 8608301 | 8608611 |
| chr_1 | g10275 | g10275.t62 | cds | g10275.t62.CDS1 | 8608301 | 8608611 |
| chr_1 | g10275 | g10275.t62 | exon | g10275.t62.exon2 | 8608687 | 8609350 |
| chr_1 | g10275 | g10275.t62 | cds | g10275.t62.CDS2 | 8608687 | 8608789 |
| chr_1 | g10275 | g10275.t62 | TSS | g10275.t62 | 8609431 | 8609431 |
Sequences
>g10275.t62 Gene=g10275 Length=975
ATGTCCCGAAAAGTTTTAATCTATGGTGGCCGTGGTGCATTAGGATCAAAATTGGTCGAA
TATTTCAAAGCTAAAAACTTTGTAAGTTAAAAATTTGTCAGAAAAAAATACTTTCTATTA
ATTTACAGTTATGTCATGCAGGCAACATTTTTGTCATTTTTTTATTGCAAAATAATGCTG
TTTCTTAAGCATGACAAAAATTTTCAACATGAGCATGTTTCTTAATCTATTCTAATGTTG
TAAAAAACCAGTTTCGATGCCACAACGTTTAGCAAAATTGCTTGAAAAACAAATACCGGT
TTTTACTAATTAATTTGATTTTTCTTTTTATATCATATATATGATCTTTAGTGGGTCGGT
TCAATCGATTTAGTTGAGAATCCTGAAGCTGATGCCAATATTTTGGTGAAACGGGATGCT
GATTTCGTTGAGCAAGAAATACAAGTATTGGAAGCTGTTAAGAATGTTTTGAATGAAGAC
AAGTTAGAAGCTGTCGTTTGTGTAGCAGGTGGATGGGCAGGTGGAAATGCATCAAAAGAC
TTGGCAAAAAATACAGACTTAATGATTAAGCAATCAGTATGGAGTTCAATAATTTCTGCA
TCCGTTGCATCTCATTGCCTTAAAGAAGGTGGAATTTTAACATTGACCGGTGCAAAACCT
GTAACAACACCTGGAATGATTGGCTATGGCCTTGCAAAAGCTGCAGTTCATCAACTCACA
AAATCACTAGCTGCAAGCGGCTCTGGTCTACCGGAAAATTCATTTGTTGCTTCTATTTTG
CCAATAACATTAGATACTCCAATGAACAGAAAATGGATGCCTAATGCAGATTTCAGCACA
TGGACTCCTTTAGATTTTGTTGCTGAACTCTTTCACAAATGGATCACATCACCTAGTGAC
CGTCCAAGCAAGAATGGTTCATTGCTGCAACTTGTAACAAAAGATTCAAAAACTGAACTT
ATTGTTGCAGAATAA
>g10275.t62 Gene=g10275 Length=137
MIKQSVWSSIISASVASHCLKEGGILTLTGAKPVTTPGMIGYGLAKAAVHQLTKSLAASG
SGLPENSFVASILPITLDTPMNRKWMPNADFSTWTPLDFVAELFHKWITSPSDRPSKNGS
LLQLVTKDSKTELIVAE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10275.t62 | Gene3D | G3DSA:3.40.50.720 | - | 1 | 137 | 0 |
| 1 | g10275.t62 | PANTHER | PTHR15104 | DIHYDROPTERIDINE REDUCTASE | 1 | 136 | 0 |
| 2 | g10275.t62 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 2 | 113 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
