Gene loci information

Transcript annotation

  • This transcript has been annotated as Dihydropteridine reductase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10275 g10275.t63 TTS g10275.t63 8608142 8608142
chr_1 g10275 g10275.t63 isoform g10275.t63 8608301 8609350
chr_1 g10275 g10275.t63 exon g10275.t63.exon1 8608301 8608621
chr_1 g10275 g10275.t63 cds g10275.t63.CDS1 8608301 8608621
chr_1 g10275 g10275.t63 exon g10275.t63.exon2 8608748 8608999
chr_1 g10275 g10275.t63 cds g10275.t63.CDS2 8608748 8608999
chr_1 g10275 g10275.t63 exon g10275.t63.exon3 8609270 8609350
chr_1 g10275 g10275.t63 cds g10275.t63.CDS3 8609270 8609350
chr_1 g10275 g10275.t63 TSS g10275.t63 8609431 8609431

Sequences

>g10275.t63 Gene=g10275 Length=654
ATGTCCCGAAAAGTTTTAATCTATGGTGGCCGTGGTGCATTAGGATCAAAATTGGTCGAA
TATTTCAAAGCTAAAAACTTTTGGGTCGGTTCAATCGATTTAGTTGAGAATCCTGAAGCT
GATGCCAATATTTTGGTGAAACGGGATGCTGATTTCGTTGAGCAAGAAATACAAGTATTG
GAAGCTGTTAAGAATGTTTTGAATGAAGACAAGTTAGAAGCTGTCGTTTGTGTAGCAGGT
GGATGGGCAGGTGGAAATGCATCAAAAGACTTGGCAAAAAATACAGACTTAATGATTAAG
CAATCAGTATGGAGTTCAATAATTTCTGCATCCGCATTAACAGCAACACCTGGAATGATT
GGCTATGGCCTTGCAAAAGCTGCAGTTCATCAACTCACAAAATCACTAGCTGCAAGCGGC
TCTGGTCTACCGGAAAATTCATTTGTTGCTTCTATTTTGCCAATAACATTAGATACTCCA
ATGAACAGAAAATGGATGCCTAATGCAGATTTCAGCACATGGACTCCTTTAGATTTTGTT
GCTGAACTCTTTCACAAATGGATCACATCACCTAGTGACCGTCCAAGCAAGAATGGTTCA
TTGCTGCAACTTGTAACAAAAGATTCAAAAACTGAACTTATTGTTGCAGAATAA

>g10275.t63 Gene=g10275 Length=217
MSRKVLIYGGRGALGSKLVEYFKAKNFWVGSIDLVENPEADANILVKRDADFVEQEIQVL
EAVKNVLNEDKLEAVVCVAGGWAGGNASKDLAKNTDLMIKQSVWSSIISASALTATPGMI
GYGLAKAAVHQLTKSLAASGSGLPENSFVASILPITLDTPMNRKWMPNADFSTWTPLDFV
AELFHKWITSPSDRPSKNGSLLQLVTKDSKTELIVAE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g10275.t63 CDD cd05334 DHPR_SDR_c_like 2 206 1.0618E-95
11 g10275.t63 Coils Coil Coil 50 70 -
9 g10275.t63 Gene3D G3DSA:3.40.50.720 - 2 109 1.5E-11
10 g10275.t63 Gene3D G3DSA:3.40.50.720 - 110 216 2.4E-20
3 g10275.t63 PANTHER PTHR15104 DIHYDROPTERIDINE REDUCTASE 2 111 3.6E-87
2 g10275.t63 PANTHER PTHR15104 DIHYDROPTERIDINE REDUCTASE 110 216 3.6E-87
4 g10275.t63 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.6E-5
7 g10275.t63 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 99 115 2.6E-5
5 g10275.t63 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 141 2.6E-5
6 g10275.t63 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 145 162 2.6E-5
1 g10275.t63 Pfam PF01370 NAD dependent epimerase/dehydratase family 5 100 2.7E-5
8 g10275.t63 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 2 193 1.27E-27

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003824 catalytic activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed