General information for g10282.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Membrane-bound transcription factor site-1 protease.
Parent gene
- The parent gene g10282 is located on chr_1: 8625106..8625937 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10282 | g10282.t4 | isoform | g10282.t4 | 8625106 | 8625937 |
| chr_1 | g10282 | g10282.t4 | exon | g10282.t4.exon1 | 8625106 | 8625689 |
| chr_1 | g10282 | g10282.t4 | cds | g10282.t4.CDS1 | 8625140 | 8625689 |
| chr_1 | g10282 | g10282.t4 | exon | g10282.t4.exon2 | 8625750 | 8625937 |
| chr_1 | g10282 | g10282.t4 | cds | g10282.t4.CDS2 | 8625750 | 8625937 |
| chr_1 | g10282 | g10282.t4 | TTS | g10282.t4 | 8626218 | 8626218 |
| chr_1 | g10282 | g10282.t4 | TSS | g10282.t4 | NA | NA |
Sequences
>g10282.t4 Gene=g10282 Length=772
TATTGTTTTTGCTGACTGGTACAATACAACTGTAATGAAACATATGAAATTTTATGATCA
AAATACACGTCAATGGTGGGTTCCTGATACTGGTGGTTGTAATGTTCCTGCACTCAATGA
ATTGTTAAATTCATTCGGAATAGAATTTGGTGATAAAGTTTTAGAAGGATATTTTACTAT
GGGCGATCATCATGACATGTATTATGCAAGTGGTACAAGTATCGTTAAATTTCCAAAAGC
AAATCAATCAGTTTTGATTGAAAGAGATTTAGTTGATCAAGGATCTGAAATTTTGAAACT
TCCACAAAATGGTAGTCATCAAAAAGACCTTCCAGAAATTGATTTAAAGAATGTTCGAGT
GAAACACAAAGAGGTTATTTTGGGAATGCAACAAACAGTGTCAACTTTAAGTTCAAGAAA
GGGAGGAAGAATAGCAGCTTATGGAGATAGTAATTGTTTAGATTCTACTCATATGGAAAA
AGCATGTTTCTGGCTTTTAGATGCACTTTTGGAATATTCAATGACGAGTCATGTAAGTGG
ATTATTAAAGAGTATGAATCGAATGCAAAATATTGAGTTTACGGAGAAAACAAAGCCGCA
GAGATTACTCCATAATAATTTACACCTGTATTCTAAAATTCTTGATTCTAATGATCGTGA
TACCAAACGACCACTTCAAAAATGCCGAAAATTCAATTGGGAGTTTCCATATTTTCTAAA
TATAACGAGATCATTTATTAATGAAGATCCTATCATAACTAACAACATCTAA
>g10282.t4 Gene=g10282 Length=245
MKHMKFYDQNTRQWWVPDTGGCNVPALNELLNSFGIEFGDKVLEGYFTMGDHHDMYYASG
TSIVKFPKANQSVLIERDLVDQGSEILKLPQNGSHQKDLPEIDLKNVRVKHKEVILGMQQ
TVSTLSSRKGGRIAAYGDSNCLDSTHMEKACFWLLDALLEYSMTSHVSGLLKSMNRMQNI
EFTEKTKPQRLLHNNLHLYSKILDSNDRDTKRPLQKCRKFNWEFPYFLNITRSFINEDPI
ITNNI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g10282.t4 | PANTHER | PTHR43806:SF7 | MEMBRANE-BOUND TRANSCRIPTION FACTOR SITE-1 PROTEASE | 1 | 157 | 0 |
| g10282.t4 | PANTHER | PTHR43806 | PEPTIDASE S8 | 1 | 157 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
