Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein crumbs.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10284 g10284.t1 TTS g10284.t1 8628629 8628629
chr_1 g10284 g10284.t1 isoform g10284.t1 8629225 8640239
chr_1 g10284 g10284.t1 exon g10284.t1.exon1 8629225 8629452
chr_1 g10284 g10284.t1 cds g10284.t1.CDS1 8629225 8629452
chr_1 g10284 g10284.t1 exon g10284.t1.exon2 8629518 8630059
chr_1 g10284 g10284.t1 cds g10284.t1.CDS2 8629518 8630059
chr_1 g10284 g10284.t1 exon g10284.t1.exon3 8630122 8630335
chr_1 g10284 g10284.t1 cds g10284.t1.CDS3 8630122 8630335
chr_1 g10284 g10284.t1 exon g10284.t1.exon4 8630394 8630507
chr_1 g10284 g10284.t1 cds g10284.t1.CDS4 8630394 8630507
chr_1 g10284 g10284.t1 exon g10284.t1.exon5 8630567 8633112
chr_1 g10284 g10284.t1 cds g10284.t1.CDS5 8630567 8633112
chr_1 g10284 g10284.t1 exon g10284.t1.exon6 8633174 8633366
chr_1 g10284 g10284.t1 cds g10284.t1.CDS6 8633174 8633366
chr_1 g10284 g10284.t1 exon g10284.t1.exon7 8633427 8633704
chr_1 g10284 g10284.t1 cds g10284.t1.CDS7 8633427 8633704
chr_1 g10284 g10284.t1 exon g10284.t1.exon8 8633765 8634334
chr_1 g10284 g10284.t1 cds g10284.t1.CDS8 8633765 8634334
chr_1 g10284 g10284.t1 exon g10284.t1.exon9 8634497 8634622
chr_1 g10284 g10284.t1 cds g10284.t1.CDS9 8634497 8634622
chr_1 g10284 g10284.t1 exon g10284.t1.exon10 8635140 8636360
chr_1 g10284 g10284.t1 cds g10284.t1.CDS10 8635140 8636360
chr_1 g10284 g10284.t1 exon g10284.t1.exon11 8640194 8640239
chr_1 g10284 g10284.t1 cds g10284.t1.CDS11 8640194 8640239
chr_1 g10284 g10284.t1 TSS g10284.t1 NA NA

Sequences

>g10284.t1 Gene=g10284 Length=6078
ATGGTTGTATGGGGACATTCGGCAATAAGTTTTCGGACATGTCGAGGCGGCGAATTACTG
TCACAAACGTACATGAAGCACGAACTGACTGTAACGTTGTCGAAAGAAGGCATAACAATT
GGTCTTAATCATCCGCAGCAGAGTTCGCGCGTAGACACTAAAATATCGGCACGACTACTC
GACAATCAATGGCACACAATTCAATTTATTTACAGATTGGGCACACTCAATTTGGTCATT
GATCGCAATTCGATTGTACTCGCTAATTCGACTTACAATCGAGATTTGCTATACGATCAG
GAAATCAAGAATGATGCAGCAGTACTTATATTAGGTCGACAATATTATGGATGTCTATTA
CATGGACCAGGATTGATGTTTAATAATAGTGAAATAAGAGCAGAAGGTGTTCTTTTTGGA
GCTTGTCCTCTCGCACCTGGTCAATGCAATGCTGATCATGATGTTTTAATTAGAGAAGTA
GTCGATCATTGTCTTAATTATCCATGTATGCATGGTCAATGTATATCAAGACCAGACTCT
TATGAATGTCATTGTCCTGCTCGTTATGGAGGCAACAATTGCGATAAAGATTATGGACCA
CCTTGTGATAAAAATCCATGTAAAAACCGTGGAATGTGTGAAGAAGATGAGAAGGGAAAT
TTCAAGTGTATTTGCGATCATGAGCACACTGGAAAGTTTTGTGAAATTCATGTTGAATCG
CATCCGCTGTGTGACAAAAATCCATGTCTTAATAATGGAACGTGCCGAGTCTTGCCGGGT
AGTAATAAATACGAGTGCCTTTGTTTGGATGGATTTACTGGCATGCGTTGCGAAACAAAC
TTCAATGATTGTGATCCACAACCATGTCAAAATGGTGGTCGATGTATAGATAAAATCAAT
GGATTTTCATGTGATTGCTCTCAAACTGGTTATACTGGTGATTTATGTCAACGAAATATT
GACGAATGCAATAGGAATCCTTGTCAAAATGGTGGCATTTGTTTCGATAATTATGGCTCT
TACACTTGTGAATGCCCAAGTGGATTTGGTGGCGATAATTGTGATCAAATTATCAACGAA
TGTCAATCGACTTGCCTCAATGGCGGCTCTTGTACTGAACAGGAAAAAGGTAAATTCATG
TGCACTTGTGTCAATGGTTTTTCGGGTGAATTTTGTGAAATTCAAAACACACAACACTGT
AATCCTCCTTGTCCCCACGATTCTGAATGTTTGGATAGTAAATGTATATGTAAAGCGGGG
ACAACAGGTGTAGTTGGACAGTGTGTCAAAAAGTCTGCTCGTACAAATGCATGCTCAAGT
TTTTGTTTAAATGGTGCTACTTGTATAGGAAAAGAAACAAACGTAACATGCTTGTGTGCA
TCGGGTTTTAGAGGCACACGATGCGAAACACCAATTGCATTAGCTTTCCAAGGGGAATGT
CAGTGCCAGAATGGTGGTTCATGTGTTCCTAACAGCAATGAATGTATTTGCCCAAACGGT
TTTGAAGGAAATTCTTGTGAAATCGAATCACGATCAGATTGTGTTGACGGAAATTGTGCT
TGTGCAAGCAATCCATGTCCAGCAAATGCAATTTGTTCTCCAAAATCAGGAAGTACATTA
GAATACAACTGTGAATGTCAACAAGGCTATGCAGGTGATAATTGTGACGACATCGATGAA
TGTATAAATAAAGACATTTGCAACCATGGTGTTTGTTTCAATAAAAACGGTTCTTATGAA
TGCTTCTGTCGACCTGGCTACACTGGTAACAATTGTCAATTTGATTTTGATGAATGCTTG
TCAAATCCATGCAAGAATGGAGCAACATGTTATGATAAAATTAACGCATTCGAATGCAAA
TGTGCACCAGGATATGAAGGAAAGCAATGTGAAACTGATATTGATGAATGTAAATCAAGT
CCATGTACTAAAGGATCCACATGTATTGATTTAATTGCCAATTATAGTTGTGCTTGTATT
GCGGGAATGACAGGCAGAAATTGTGAAATTGACATTGATGATTGTGCTTCGACACCTTGT
GAACATGGTGGAAAATGCATTGATCAGTTGGGTGGTTTCAAATGTGATTGTTCAAATACT
GGCTATGACGGCGTTGTCTGTCAACAAAACATTAATGAATGTGAATCAAACCCATGCATG
AATGGTGCTTCTTGTATCGATAAAATCAATGATTATACTTGCGAATGTTTCCTTGGCTAT
GAAGGAAAAAATTGCGAAAAGGATATAAATGAGTGTGATCCAAATCCATGCCAATATCAA
AGTACATGTCTTGAAAGATCCAATCAAACATTATACAGTTTGCATGACAAAACACAATTA
CCTCAAATATTTAGCCGCAAGTTTGCATACGAAAATGCGAGCGGTCACGAGTGCATTTGT
GTGCCCGGTACGAAAGGCCGTAACTGTGAAATAAATATCAACGAATGTGATAGCAATCCT
TGCAGTAAATATGGAACTTGTGTTGATGGAATCGGAATGTATACATGCGAATGTGAGCCA
GGTTTTCAGGGTGTCCATTGTGAGGAAGATATTGACGAATGTTTGATGAAACCTTGTCTT
TTTGGAACATGCATTGACGGTCGTAATAATTATGAATGTGATTGTGATGAAAAGTATGGT
GGAAAGAATTGTTCTGTTGAATTAACTGGTTGTGTCTCATCGCCATGCAAAAATGATGGA
TCTTGTGTACCTTATTTGAATTTGGAAGACGAAACTGAACATCTTTTTAACTGTACTTGC
AAAAATGGATTTTATGGAAGAACATGTGAAATTGTTAGCACTATGTCACTCGTCGATCAA
AGTTTAATTACTGTTAAAACAAATCGTGAAGAAGGTTATGATATTCAACTTCGTTTCCGC
ACAACATTACCAAATGGAGTGTTGGCATTCGGAACAGCTGATAGTGCAAACAGTTACATC
TTAGAGCTCGTAAATGGTAGACTTAACTTACATTCGTCATTATTAAACAAATGGGAAGGA
GTCTTTATTGGTTCACAACTGAATGATAGTAAATGGCACAAGGTTTTTGTCGCTATTAAT
TCCTCGCATCTGGTATTATCAGCGAATGATGAACAAACAATTTATCCCATCAATTTCAAC
TCATACGATAGTACAAATGGCAGTCACGTTAGTTTTCCTGTCACCTATCTTGGCGGTTAT
GTCAATACACCTTTTTATTTACGACATTTGACAAACCATGTAACACCAACAGCATTTATT
GGATGCATGGAAGATGTTGTAATTAATAATCAATGGGTATTGCCAGGAACAACTGGTGAT
GATGTTGTAAATTTAACAAATATAGAAAAAGGATGTAAGAGAGATGAACAGTGCAATCCA
AATCCTTGCCATTCAAAAGGTTTATGTACAGATTTGTGGTATAAATTTTCATGTGAATGC
CAACGACCACATCTTGGACCAACATGCAAATATAGCATCATTGCAGCAACTTTTGGTCAT
GAAAACACAACTAAATCAGCAGTTTTCGTAAATGTCAGTGATTCAGCTAGACGAGCTGTT
CGTTCAGTTCTTGATATTTCAATGTTTATAAGAACACGACAACCAACTGGAAAAATCTTT
TATCTTGGATCAGATCCAAAACAAATTTATGGTCCGAATGGTGAATTAAGAGAACAAACT
TCAATTTCAGCTACACTGTTAAAAGGTGAACTTCTTGTTTCAATGAAATTTAATGGTACA
CCAGAAAGTTATGCTGTTGGAGGAAAATCTTTAGATAATGGTTTTAATCATCTTATCGAA
GTTATCAGGAATGCAACACTTGTGCAAGTAAAAATTAATAATACAGAATACTTTAGAAAA
ACACTTTCAACAACTGGACAATTGAATGCTCAAGTTCTTTATTTGGGTGCACCCGAGACA
TCAATTAATCCAGAAGATAATATCATTGATGACAAGGATTATTTCAAAGGAATCATTCAA
GATGTTCAATTGTCAAATGGATCGCATGCAATGACTGTTGAACTTTATCCATTAGAAGAT
GAAGAAGGACTTAATCTGCCTCCGCCATTTGGTGAAGTTCATATAGATAGAGATTCAGTT
CTTAGAGGAGAAGTTTCTGACGATCTTTGTAGAAATATGCCATGCGAACATGGTGCGACT
TGTCATAATACATGGAATGATTTTGTTTGTGAATGCACAAAAGGCTACAAAGGCAAATAC
TGCCAAGATATTCAGTTCTGTGAACTGCACAAGTGTCCTGGACATGCATTTTGCAAAAAT
CTTGATGATGGCTACGATTGTATTACAAATGTGACTTTCAGAGGAACTGAAGACAGTCCA
TTACAGTATTACTTCGTTTCGCAAGGAACTGATGATTTAGAAAAGACAAAAGCTTATGAG
AAAGTAATTGAAATAGCCTATAGAACAAAAATTGGTGGTACTTTATTATATGTTGAAGAT
GAGCAAGATATGTACTTTGAAATTGCTTCATATAAAGACCAACTTACAGTTCAATGGCGT
CTCTCAACTGAACTTGCAAATGTTCATAGATTCACACGAGAAAATTCACTGATTTATGAT
TGGAATTATTTGTATTTGCGTGTATCTGAGAATAAACTAGAAGCAGGCTGGAAAGGATGG
GAAACTCAAGATATTCAACCTCCACTTTCGACGCACATCGATATGAAGGCTTTTGAATAC
CTCTTTTCTGGAAAATATCCAATTTCTTTGGGAGGCTCAAATCCAACACGTTCAAATGCA
ATTTTCAAAGGCCTAAATCTCAAAGGTTCAACATTCAAAGGATGCATTGGAGAAACGAGA
ATTGGTGACCTTTTACTGCCTTTCTTCCCACATTCTGAAATTTATACAGAAAATCTCAAA
CCACGAGCTCACTATAGTCTAAATTCAAGTAGAGTAGACGAAGGCTGTATTTTATGCTTT
GAACAAGATTGTCAAAATGGTGGTGTATGCAAAAATCCTAAAGAAAATTATACTTGCAAA
TGTCCAATTGGTTATGAAAAAGATGATTGTTCACAAAATATCGATGAATGCCTTCAATCA
GAATGTACAAATAATTCTACTTGTATTGATGGAATTGGCAATTATACTTGCATGTGTTTA
GTTGGCTACGAAGGAACTTTCTGTGAACATGAAATTGATGAATGTAAATCTCAGCCATGT
CATAATGGTGGCAATTGCACTGATCTGATTGCTGACTTCAAATGTGATTGTAGTGAAGAA
TATGCTGGAAAACAATGTGATGTTCTACGATTAGTGACTTGTGAAAATTCACCTTGCAGA
TCAGGTTCAACTTGTCAAGATGGACATAACATCACGACGGGAAATAATTTTACATGCATA
TGCAAAGAAGGCTTTGAAGGGGCACTTTGTGACTACGCTTACTGTCTTGTTGAGCCGTGC
AAAAATGATGGAAACTGTTATACAGATTCAGAAGTGCCAGAGTGTAAATGCCAACTTGGT
TTCATGGGAAAATATTGTGAAATTGATATTGATGATTGTGCCTCAACTCCATGTCAAAAT
AATGCAACATGCATTGACTTGGTGAACGATTATAAATGCGAATGTGAAGGAACTGGTTTC
ACAGGAGAAAATTGTGAAAATGACATTGATGAATGTTTGACAGAAAATATTTCATGTGGC
GGTTTGGGAACTTGTATTAATACAAAAGGATCTTATAAATGTCAATGTAATGAAGGAATG
TGTGGATCAGATTGCAATTTAGTAGATCCTTGTCAAGAAAATGAGTCACCGTGCATGAAT
GGTGGTAAATGTATTGAAACATGTGTCACATTCCCTGACTATAGGTGTCAATGTGTTGAT
GGTTATGCTGGCAAAAATTGCACAGAACAAGTGCTTTTAGCAACAGGACCAACTGCAGGT
GACATTTTAATAATTGTCATTCCAATCGTCGTCAGTTTATTAGCTATCGGTGGAATTGTT
CTTGCAGTACTTTTAATGATGGCAAGAAATAAAAGAGCAACGAGAGGAACTTATAGTCCT
TCAGCGCAAGAATATTGCAATCCTCGACTTGAAATGGATTCTGTTTTAAAACAACCACCA
GAGGAGAGACTTATCTAA

>g10284.t1 Gene=g10284 Length=2025
MVVWGHSAISFRTCRGGELLSQTYMKHELTVTLSKEGITIGLNHPQQSSRVDTKISARLL
DNQWHTIQFIYRLGTLNLVIDRNSIVLANSTYNRDLLYDQEIKNDAAVLILGRQYYGCLL
HGPGLMFNNSEIRAEGVLFGACPLAPGQCNADHDVLIREVVDHCLNYPCMHGQCISRPDS
YECHCPARYGGNNCDKDYGPPCDKNPCKNRGMCEEDEKGNFKCICDHEHTGKFCEIHVES
HPLCDKNPCLNNGTCRVLPGSNKYECLCLDGFTGMRCETNFNDCDPQPCQNGGRCIDKIN
GFSCDCSQTGYTGDLCQRNIDECNRNPCQNGGICFDNYGSYTCECPSGFGGDNCDQIINE
CQSTCLNGGSCTEQEKGKFMCTCVNGFSGEFCEIQNTQHCNPPCPHDSECLDSKCICKAG
TTGVVGQCVKKSARTNACSSFCLNGATCIGKETNVTCLCASGFRGTRCETPIALAFQGEC
QCQNGGSCVPNSNECICPNGFEGNSCEIESRSDCVDGNCACASNPCPANAICSPKSGSTL
EYNCECQQGYAGDNCDDIDECINKDICNHGVCFNKNGSYECFCRPGYTGNNCQFDFDECL
SNPCKNGATCYDKINAFECKCAPGYEGKQCETDIDECKSSPCTKGSTCIDLIANYSCACI
AGMTGRNCEIDIDDCASTPCEHGGKCIDQLGGFKCDCSNTGYDGVVCQQNINECESNPCM
NGASCIDKINDYTCECFLGYEGKNCEKDINECDPNPCQYQSTCLERSNQTLYSLHDKTQL
PQIFSRKFAYENASGHECICVPGTKGRNCEININECDSNPCSKYGTCVDGIGMYTCECEP
GFQGVHCEEDIDECLMKPCLFGTCIDGRNNYECDCDEKYGGKNCSVELTGCVSSPCKNDG
SCVPYLNLEDETEHLFNCTCKNGFYGRTCEIVSTMSLVDQSLITVKTNREEGYDIQLRFR
TTLPNGVLAFGTADSANSYILELVNGRLNLHSSLLNKWEGVFIGSQLNDSKWHKVFVAIN
SSHLVLSANDEQTIYPINFNSYDSTNGSHVSFPVTYLGGYVNTPFYLRHLTNHVTPTAFI
GCMEDVVINNQWVLPGTTGDDVVNLTNIEKGCKRDEQCNPNPCHSKGLCTDLWYKFSCEC
QRPHLGPTCKYSIIAATFGHENTTKSAVFVNVSDSARRAVRSVLDISMFIRTRQPTGKIF
YLGSDPKQIYGPNGELREQTSISATLLKGELLVSMKFNGTPESYAVGGKSLDNGFNHLIE
VIRNATLVQVKINNTEYFRKTLSTTGQLNAQVLYLGAPETSINPEDNIIDDKDYFKGIIQ
DVQLSNGSHAMTVELYPLEDEEGLNLPPPFGEVHIDRDSVLRGEVSDDLCRNMPCEHGAT
CHNTWNDFVCECTKGYKGKYCQDIQFCELHKCPGHAFCKNLDDGYDCITNVTFRGTEDSP
LQYYFVSQGTDDLEKTKAYEKVIEIAYRTKIGGTLLYVEDEQDMYFEIASYKDQLTVQWR
LSTELANVHRFTRENSLIYDWNYLYLRVSENKLEAGWKGWETQDIQPPLSTHIDMKAFEY
LFSGKYPISLGGSNPTRSNAIFKGLNLKGSTFKGCIGETRIGDLLLPFFPHSEIYTENLK
PRAHYSLNSSRVDEGCILCFEQDCQNGGVCKNPKENYTCKCPIGYEKDDCSQNIDECLQS
ECTNNSTCIDGIGNYTCMCLVGYEGTFCEHEIDECKSQPCHNGGNCTDLIADFKCDCSEE
YAGKQCDVLRLVTCENSPCRSGSTCQDGHNITTGNNFTCICKEGFEGALCDYAYCLVEPC
KNDGNCYTDSEVPECKCQLGFMGKYCEIDIDDCASTPCQNNATCIDLVNDYKCECEGTGF
TGENCENDIDECLTENISCGGLGTCINTKGSYKCQCNEGMCGSDCNLVDPCQENESPCMN
GGKCIETCVTFPDYRCQCVDGYAGKNCTEQVLLATGPTAGDILIIVIPIVVSLLAIGGIV
LAVLLMMARNKRATRGTYSPSAQEYCNPRLEMDSVLKQPPEERLI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
100 g10284.t1 CDD cd00054 EGF_CA 245 278 2.13555E-4
107 g10284.t1 CDD cd00054 EGF_CA 280 317 6.82406E-5
104 g10284.t1 CDD cd00054 EGF_CA 319 354 3.60552E-8
97 g10284.t1 CDD cd00054 EGF_CA 358 393 0.00876167
96 g10284.t1 CDD cd00054 EGF_CA 557 593 2.10395E-7
109 g10284.t1 CDD cd00054 EGF_CA 595 631 1.05939E-7
103 g10284.t1 CDD cd00054 EGF_CA 633 669 8.01336E-6
95 g10284.t1 CDD cd00054 EGF_CA 671 708 4.17433E-5
108 g10284.t1 CDD cd00054 EGF_CA 710 746 3.46697E-8
98 g10284.t1 CDD cd00054 EGF_CA 812 848 1.0287E-7
99 g10284.t1 CDD cd00054 EGF_CA 850 884 0.00113846
112 g10284.t1 CDD cd00110 LamG 934 1089 9.5173E-20
113 g10284.t1 CDD cd00110 LamG 1178 1324 7.82225E-12
110 g10284.t1 CDD cd00054 EGF_CA 1374 1402 2.78997E-5
101 g10284.t1 CDD cd00054 EGF_CA 1673 1709 6.64954E-6
105 g10284.t1 CDD cd00054 EGF_CA 1712 1746 3.4633E-5
106 g10284.t1 CDD cd00054 EGF_CA 1829 1866 6.12629E-7
102 g10284.t1 CDD cd00054 EGF_CA 1868 1905 5.10113E-6
111 g10284.t1 CDD cd00054 EGF_CA 1908 1948 7.98606E-4
89 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 156 197 1.6E-8
65 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 201 240 3.8E-8
85 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 241 281 3.6E-12
71 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 282 318 3.6E-13
78 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 319 357 1.4E-12
88 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 358 396 8.3E-8
75 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 427 471 5.4E-8
81 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 474 512 1.2E-7
70 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 520 557 6.2E-7
79 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 558 596 2.2E-9
82 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 597 635 1.3E-15
68 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 636 673 7.9E-14
73 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 674 710 7.9E-11
63 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 712 749 9.6E-15
66 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 750 813 9.8E-11
86 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 814 849 2.2E-13
84 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 850 887 2.6E-9
80 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 890 935 1.2E-8
91 g10284.t1 Gene3D G3DSA:2.60.120.200 - 936 1101 2.0E-24
87 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 1113 1151 4.2E-6
90 g10284.t1 Gene3D G3DSA:2.60.120.200 - 1165 1334 7.8E-16
77 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 1368 1437 1.1E-10
72 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 1638 1675 2.9E-6
74 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 1676 1710 2.8E-11
64 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 1711 1748 1.1E-11
62 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 1749 1794 2.7E-7
69 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 1795 1830 4.0E-7
76 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 1831 1867 2.9E-14
83 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 1868 1907 2.4E-7
67 g10284.t1 Gene3D G3DSA:2.10.25.10 Laminin 1908 1951 2.4E-8
25 g10284.t1 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 160 308 0.0
31 g10284.t1 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 160 308 0.0
24 g10284.t1 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 309 424 0.0
30 g10284.t1 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 309 424 0.0
22 g10284.t1 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 426 570 0.0
28 g10284.t1 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 426 570 0.0
23 g10284.t1 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 560 1636 0.0
29 g10284.t1 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 560 1636 0.0
26 g10284.t1 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 1639 1872 0.0
32 g10284.t1 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 1639 1872 0.0
27 g10284.t1 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 1875 2025 0.0
33 g10284.t1 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 1875 2025 0.0
37 g10284.t1 PRINTS PR00010 Type II EGF-like signature 319 330 7.7E-5
35 g10284.t1 PRINTS PR00010 Type II EGF-like signature 331 338 7.7E-5
34 g10284.t1 PRINTS PR00010 Type II EGF-like signature 339 349 7.7E-5
36 g10284.t1 PRINTS PR00010 Type II EGF-like signature 664 670 7.7E-5
16 g10284.t1 Pfam PF12661 Human growth factor-like EGF 169 186 0.02
5 g10284.t1 Pfam PF00008 EGF-like domain 244 274 5.3E-7
4 g10284.t1 Pfam PF00008 EGF-like domain 284 314 1.1E-7
7 g10284.t1 Pfam PF00008 EGF-like domain 323 353 6.2E-8
14 g10284.t1 Pfam PF12661 Human growth factor-like EGF 365 387 0.04
15 g10284.t1 Pfam PF12661 Human growth factor-like EGF 442 463 0.0027
17 g10284.t1 Pfam PF12661 Human growth factor-like EGF 482 501 0.01
19 g10284.t1 Pfam PF07645 Calcium-binding EGF domain 557 591 2.2E-6
9 g10284.t1 Pfam PF00008 EGF-like domain 599 628 5.1E-7
6 g10284.t1 Pfam PF00008 EGF-like domain 675 704 1.5E-5
10 g10284.t1 Pfam PF00008 EGF-like domain 714 744 2.9E-8
2 g10284.t1 Pfam PF00008 EGF-like domain 816 845 3.8E-8
21 g10284.t1 Pfam PF00054 Laminin G domain 959 1093 2.6E-21
20 g10284.t1 Pfam PF00054 Laminin G domain 1190 1327 3.3E-17
12 g10284.t1 Pfam PF00008 EGF-like domain 1370 1400 3.0E-6
11 g10284.t1 Pfam PF00008 EGF-like domain 1639 1665 1.6E-5
13 g10284.t1 Pfam PF12661 Human growth factor-like EGF 1682 1703 0.0015
3 g10284.t1 Pfam PF00008 EGF-like domain 1715 1744 3.1E-5
1 g10284.t1 Pfam PF00008 EGF-like domain 1833 1864 4.7E-8
18 g10284.t1 Pfam PF07645 Calcium-binding EGF domain 1868 1899 1.1E-5
8 g10284.t1 Pfam PF00008 EGF-like domain 1911 1946 2.2E-6
93 g10284.t1 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 1961 -
94 g10284.t1 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1962 1985 -
92 g10284.t1 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1986 2025 -
199 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 183 194 -
207 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 223 234 -
182 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 266 277 -
201 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 266 277 -
226 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 295 306 -
219 g10284.t1 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 319 343 -
222 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 334 345 -
181 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 343 354 -
200 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 343 354 -
185 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 381 392 -
208 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 381 392 -
178 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 457 468 -
196 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 457 468 -
171 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 495 506 -
188 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 495 506 -
170 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 544 555 -
187 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 544 555 -
229 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 572 583 -
184 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 581 592 -
205 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 581 592 -
216 g10284.t1 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 595 619 -
231 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 610 621 -
183 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 619 630 -
203 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 619 630 -
234 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 648 659 -
206 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 657 668 -
220 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 686 697 -
215 g10284.t1 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 710 734 -
227 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 725 736 -
186 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 734 745 -
209 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 734 745 -
210 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 798 809 -
214 g10284.t1 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 812 836 -
228 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 827 838 -
174 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 836 847 -
192 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 836 847 -
213 g10284.t1 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 850 873 -
224 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 864 875 -
198 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 873 884 -
173 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 918 929 -
191 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 918 929 -
232 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1129 1140 -
204 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 1138 1149 -
230 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1381 1392 -
176 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 1390 1401 -
194 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 1390 1401 -
221 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1650 1661 -
180 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 1659 1670 -
217 g10284.t1 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 1666 1697 -
233 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1688 1699 -
172 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 1697 1708 -
189 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 1697 1708 -
218 g10284.t1 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 1711 1735 -
225 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1726 1737 -
202 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 1735 1746 -
179 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 1779 1790 -
197 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 1779 1790 -
177 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 1815 1826 -
195 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 1815 1826 -
211 g10284.t1 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 1829 1853 -
223 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1844 1855 -
212 g10284.t1 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 1868 1894 -
235 g10284.t1 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1885 1896 -
190 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 1894 1905 -
175 g10284.t1 ProSitePatterns PS01186 EGF-like domain signature 2. 1936 1947 -
193 g10284.t1 ProSitePatterns PS00022 EGF-like domain signature 1. 1936 1947 -
238 g10284.t1 ProSiteProfiles PS50025 Laminin G domain profile. 1 149 12.557
263 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 160 195 14.749
243 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 198 235 17.71
239 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 240 278 21.095
255 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 280 317 21.587
253 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 319 355 24.607
260 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 357 393 20.38
256 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 434 469 16.307
257 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 476 507 13.905
254 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 520 556 12.16
241 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 557 593 16.907
266 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 595 631 23.904
249 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 633 669 19.587
240 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 671 708 20.091
262 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 710 746 23.808
250 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 748 810 9.208
244 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 812 848 22.725
252 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 850 885 15.533
245 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 887 930 15.497
236 g10284.t1 ProSiteProfiles PS50025 Laminin G domain profile. 932 1112 24.113
247 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1114 1150 13.704
237 g10284.t1 ProSiteProfiles PS50025 Laminin G domain profile. 1159 1370 15.049
242 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1366 1402 19.929
261 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1637 1671 12.162
248 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1673 1709 20.87
246 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1711 1747 20.782
265 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1750 1791 16.945
259 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1792 1827 12.547
251 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1829 1866 22.305
264 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1868 1906 12.772
258 g10284.t1 ProSiteProfiles PS50026 EGF-like domain profile. 1907 1948 16.58
138 g10284.t1 SMART SM00179 egfca_6 161 195 0.0019
144 g10284.t1 SMART SM00181 egf_5 163 195 3.3E-4
145 g10284.t1 SMART SM00181 egf_5 201 235 0.069
125 g10284.t1 SMART SM00179 egfca_6 203 235 0.065
153 g10284.t1 SMART SM00181 egf_5 243 278 5.0E-7
122 g10284.t1 SMART SM00179 egfca_6 245 278 0.011
131 g10284.t1 SMART SM00179 egfca_6 280 317 1.0E-7
162 g10284.t1 SMART SM00181 egf_5 283 317 9.6E-5
129 g10284.t1 SMART SM00179 egfca_6 319 355 5.7E-10
156 g10284.t1 SMART SM00181 egf_5 322 355 7.6E-7
118 g10284.t1 SMART SM00179 egfca_6 358 393 0.0041
141 g10284.t1 SMART SM00181 egf_5 360 393 1.1E-4
164 g10284.t1 SMART SM00181 egf_5 399 429 16.0
132 g10284.t1 SMART SM00179 egfca_6 434 469 0.027
157 g10284.t1 SMART SM00181 egf_5 437 469 1.1E-5
150 g10284.t1 SMART SM00181 egf_5 479 507 0.18
123 g10284.t1 SMART SM00179 egfca_6 516 556 1.2
160 g10284.t1 SMART SM00181 egf_5 520 556 0.0039
117 g10284.t1 SMART SM00179 egfca_6 557 593 1.1E-10
161 g10284.t1 SMART SM00181 egf_5 560 593 5.9E-6
136 g10284.t1 SMART SM00179 egfca_6 595 631 3.5E-12
159 g10284.t1 SMART SM00181 egf_5 598 631 1.1E-7
127 g10284.t1 SMART SM00179 egfca_6 633 669 1.1E-10
143 g10284.t1 SMART SM00181 egf_5 636 669 5.2E-5
116 g10284.t1 SMART SM00179 egfca_6 671 708 2.2E-8
146 g10284.t1 SMART SM00181 egf_5 674 708 0.0018
133 g10284.t1 SMART SM00179 egfca_6 710 746 3.9E-11
151 g10284.t1 SMART SM00181 egf_5 713 746 2.2E-7
149 g10284.t1 SMART SM00181 egf_5 751 810 0.14
121 g10284.t1 SMART SM00179 egfca_6 812 848 6.1E-10
155 g10284.t1 SMART SM00181 egf_5 815 848 2.2E-6
130 g10284.t1 SMART SM00179 egfca_6 850 885 4.5E-7
163 g10284.t1 SMART SM00181 egf_5 853 885 0.0025
158 g10284.t1 SMART SM00181 egf_5 890 930 0.0046
140 g10284.t1 SMART SM00282 LamG_3 951 1091 2.9E-21
115 g10284.t1 SMART SM00179 egfca_6 1115 1150 0.49
169 g10284.t1 SMART SM00181 egf_5 1117 1150 16.0
139 g10284.t1 SMART SM00282 LamG_3 1182 1327 1.2E-12
119 g10284.t1 SMART SM00179 egfca_6 1366 1402 1.2E-4
154 g10284.t1 SMART SM00181 egf_5 1369 1402 3.4E-5
135 g10284.t1 SMART SM00179 egfca_6 1631 1671 0.015
165 g10284.t1 SMART SM00181 egf_5 1638 1671 5.2E-4
126 g10284.t1 SMART SM00179 egfca_6 1673 1709 1.8E-9
147 g10284.t1 SMART SM00181 egf_5 1676 1709 1.0E-4
124 g10284.t1 SMART SM00179 egfca_6 1711 1747 2.1E-8
148 g10284.t1 SMART SM00181 egf_5 1714 1747 1.4E-4
142 g10284.t1 SMART SM00181 egf_5 1753 1791 0.0016
120 g10284.t1 SMART SM00179 egfca_6 1754 1791 0.86
152 g10284.t1 SMART SM00181 egf_5 1794 1827 0.0083
128 g10284.t1 SMART SM00179 egfca_6 1829 1866 8.7E-10
168 g10284.t1 SMART SM00181 egf_5 1832 1866 4.5E-6
134 g10284.t1 SMART SM00179 egfca_6 1868 1906 2.6E-6
166 g10284.t1 SMART SM00181 egf_5 1871 1906 0.69
137 g10284.t1 SMART SM00179 egfca_6 1908 1948 0.15
167 g10284.t1 SMART SM00181 egf_5 1910 1948 3.8E-5
59 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 159 198 3.36E-7
48 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 201 240 4.85E-6
61 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 243 279 1.23E-9
43 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 280 323 2.65E-8
56 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 319 362 7.26E-11
60 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 360 397 1.73E-5
53 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 436 478 2.41E-6
52 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 557 594 1.57E-7
47 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 595 636 7.82E-12
57 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 632 675 2.98E-11
42 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 671 714 7.19E-8
51 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 710 752 1.17E-11
44 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 812 855 2.39E-10
50 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 846 887 4.48E-7
40 g10284.t1 SUPERFAMILY SSF49899 Concanavalin A-like lectins/glucanases 918 1112 1.86E-26
39 g10284.t1 SUPERFAMILY SSF49899 Concanavalin A-like lectins/glucanases 1138 1326 7.92E-16
58 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 1365 1402 7.81E-8
38 g10284.t1 SUPERFAMILY SSF49899 Concanavalin A-like lectins/glucanases 1369 1611 4.17E-6
49 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 1639 1677 3.43E-6
45 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 1673 1711 4.45E-9
46 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 1711 1748 2.05E-9
55 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 1752 1795 6.9E-7
41 g10284.t1 SUPERFAMILY SSF57184 Growth factor receptor domain 1816 1948 1.07E-6
54 g10284.t1 SUPERFAMILY SSF57196 EGF/Laminin 1829 1873 9.59E-10
114 g10284.t1 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1963 1985 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values