Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein crumbs.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10284 g10284.t2 TTS g10284.t2 8628629 8628629
chr_1 g10284 g10284.t2 isoform g10284.t2 8629225 8640239
chr_1 g10284 g10284.t2 exon g10284.t2.exon1 8629225 8629452
chr_1 g10284 g10284.t2 cds g10284.t2.CDS1 8629225 8629452
chr_1 g10284 g10284.t2 exon g10284.t2.exon2 8629518 8630059
chr_1 g10284 g10284.t2 cds g10284.t2.CDS2 8629518 8630059
chr_1 g10284 g10284.t2 exon g10284.t2.exon3 8630122 8630335
chr_1 g10284 g10284.t2 cds g10284.t2.CDS3 8630122 8630335
chr_1 g10284 g10284.t2 exon g10284.t2.exon4 8630394 8630507
chr_1 g10284 g10284.t2 cds g10284.t2.CDS4 8630394 8630507
chr_1 g10284 g10284.t2 exon g10284.t2.exon5 8630567 8633112
chr_1 g10284 g10284.t2 cds g10284.t2.CDS5 8630567 8633112
chr_1 g10284 g10284.t2 exon g10284.t2.exon6 8633174 8633366
chr_1 g10284 g10284.t2 cds g10284.t2.CDS6 8633174 8633366
chr_1 g10284 g10284.t2 exon g10284.t2.exon7 8633427 8633704
chr_1 g10284 g10284.t2 cds g10284.t2.CDS7 8633427 8633704
chr_1 g10284 g10284.t2 exon g10284.t2.exon8 8633765 8634334
chr_1 g10284 g10284.t2 cds g10284.t2.CDS8 8633765 8634334
chr_1 g10284 g10284.t2 exon g10284.t2.exon9 8635278 8636360
chr_1 g10284 g10284.t2 cds g10284.t2.CDS9 8635278 8636360
chr_1 g10284 g10284.t2 exon g10284.t2.exon10 8640194 8640239
chr_1 g10284 g10284.t2 cds g10284.t2.CDS10 8640194 8640239
chr_1 g10284 g10284.t2 TSS g10284.t2 NA NA

Sequences

>g10284.t2 Gene=g10284 Length=5814
ATGGTTGTATGGGGACATTCGGCAATAAGTTTTCGGACATGTCGAGGCGGCGAATTACTG
TCACAAACGTACATGAAGCACGAACTGACTGTAACGTTGTCGAAAGAAGGCATAACAATT
GGTCTTAATCATCCGCAGCAGAGTTCGCGCGTAGACACTAAAATATCGGCACGACTACTC
GACAATCAATGGCACACAATTCAATTTATTTACAGATTGGGCACACTCAATTTGGTCATT
GATCGCAATTCGATTGTACTCGCTAATTCGACTTACAATCGAGATTTGCTATACGATCAG
GAAATCAAGAATGATGCAGCAGTACTTATATTAGGTCGACAATATTATGGATGTCTATTA
CATGGACCAGGATTGATGTTTAATAATAGTGAAATAAGAGCAGAAGGTGTTCTTTTTGGA
GCTTGTCCTCTCGCACCTGGTCAATGCAATGCTGATCATGATGTTTTAATTAGAGAAGTA
GTCGATCATTGTCTTAATTATCCATGTATGCATGGTCAATGTATATCAAGACCAGACTCT
TATGAATGTCATTGTCCTGCTCGTTATGGAGGCAACAATTGCGATAAAGATTATGGACCA
CCTTGTGATAAAAATCCATGTAAAAACCGTGGAATGTGTGAAGAAGATGAGAAGGGAAAT
TTCAAGTGTATTTGCGATCATGAGCACACTGGAAAGTTTTGTGAAATTCATGTTGAATCG
CATCCGCTGTGTGACAAAAATCCATGTCTTAATAATGGAACGTGCCGAGTCTTGCCGGGT
AGTAATAAATACGAGTGCCTTTGTTTGGATGGATTTACTGGCATGCGTTGCGAAACAAAC
TTCAATGATTGTGATCCACAACCATGTCAAAATGGTGGTCGATGTATAGATAAAATCAAT
GGATTTTCATGTGATTGCTCTCAAACTGGTTATACTGGTGATTTATGTCAACGAAATATT
GACGAATGCAATAGGAATCCTTGTCAAAATGGTGGCATTTGTTTCGATAATTATGGCTCT
TACACTTGTGAATGCCCAAGTGGATTTGGTGGCGATAATTGTGATCAAATTATCAACGAA
TGTCAATCGACTTGCCTCAATGGCGGCTCTTGTACTGAACAGGAAAAAGGCACACGATGC
GAAACACCAATTGCATTAGCTTTCCAAGGGGAATGTCAGTGCCAGAATGGTGGTTCATGT
GTTCCTAACAGCAATGAATGTATTTGCCCAAACGGTTTTGAAGGAAATTCTTGTGAAATC
GAATCACGATCAGATTGTGTTGACGGAAATTGTGCTTGTGCAAGCAATCCATGTCCAGCA
AATGCAATTTGTTCTCCAAAATCAGGAAGTACATTAGAATACAACTGTGAATGTCAACAA
GGCTATGCAGGTGATAATTGTGACGACATCGATGAATGTATAAATAAAGACATTTGCAAC
CATGGTGTTTGTTTCAATAAAAACGGTTCTTATGAATGCTTCTGTCGACCTGGCTACACT
GGTAACAATTGTCAATTTGATTTTGATGAATGCTTGTCAAATCCATGCAAGAATGGAGCA
ACATGTTATGATAAAATTAACGCATTCGAATGCAAATGTGCACCAGGATATGAAGGAAAG
CAATGTGAAACTGATATTGATGAATGTAAATCAAGTCCATGTACTAAAGGATCCACATGT
ATTGATTTAATTGCCAATTATAGTTGTGCTTGTATTGCGGGAATGACAGGCAGAAATTGT
GAAATTGACATTGATGATTGTGCTTCGACACCTTGTGAACATGGTGGAAAATGCATTGAT
CAGTTGGGTGGTTTCAAATGTGATTGTTCAAATACTGGCTATGACGGCGTTGTCTGTCAA
CAAAACATTAATGAATGTGAATCAAACCCATGCATGAATGGTGCTTCTTGTATCGATAAA
ATCAATGATTATACTTGCGAATGTTTCCTTGGCTATGAAGGAAAAAATTGCGAAAAGGAT
ATAAATGAGTGTGATCCAAATCCATGCCAATATCAAAGTACATGTCTTGAAAGATCCAAT
CAAACATTATACAGTTTGCATGACAAAACACAATTACCTCAAATATTTAGCCGCAAGTTT
GCATACGAAAATGCGAGCGGTCACGAGTGCATTTGTGTGCCCGGTACGAAAGGCCGTAAC
TGTGAAATAAATATCAACGAATGTGATAGCAATCCTTGCAGTAAATATGGAACTTGTGTT
GATGGAATCGGAATGTATACATGCGAATGTGAGCCAGGTTTTCAGGGTGTCCATTGTGAG
GAAGATATTGACGAATGTTTGATGAAACCTTGTCTTTTTGGAACATGCATTGACGGTCGT
AATAATTATGAATGTGATTGTGATGAAAAGTATGGTGGAAAGAATTGTTCTGTTGAATTA
ACTGGTTGTGTCTCATCGCCATGCAAAAATGATGGATCTTGTGTACCTTATTTGAATTTG
GAAGACGAAACTGAACATCTTTTTAACTGTACTTGCAAAAATGGATTTTATGGAAGAACA
TGTGAAATTGTTAGCACTATGTCACTCGTCGATCAAAGTTTAATTACTGTTAAAACAAAT
CGTGAAGAAGGTTATGATATTCAACTTCGTTTCCGCACAACATTACCAAATGGAGTGTTG
GCATTCGGAACAGCTGATAGTGCAAACAGTTACATCTTAGAGCTCGTAAATGGTAGACTT
AACTTACATTCGTCATTATTAAACAAATGGGAAGGAGTCTTTATTGGTTCACAACTGAAT
GATAGTAAATGGCACAAGGTTTTTGTCGCTATTAATTCCTCGCATCTGGTATTATCAGCG
AATGATGAACAAACAATTTATCCCATCAATTTCAACTCATACGATAGTACAAATGGCAGT
CACGTTAGTTTTCCTGTCACCTATCTTGGCGGTTATGTCAATACACCTTTTTATTTACGA
CATTTGACAAACCATGTAACACCAACAGCATTTATTGGATGCATGGAAGATGTTGTAATT
AATAATCAATGGGTATTGCCAGGAACAACTGGTGATGATGTTGTAAATTTAACAAATATA
GAAAAAGGATGTAAGAGAGATGAACAGTGCAATCCAAATCCTTGCCATTCAAAAGGTTTA
TGTACAGATTTGTGGTATAAATTTTCATGTGAATGCCAACGACCACATCTTGGACCAACA
TGCAAATATAGCATCATTGCAGCAACTTTTGGTCATGAAAACACAACTAAATCAGCAGTT
TTCGTAAATGTCAGTGATTCAGCTAGACGAGCTGTTCGTTCAGTTCTTGATATTTCAATG
TTTATAAGAACACGACAACCAACTGGAAAAATCTTTTATCTTGGATCAGATCCAAAACAA
ATTTATGGTCCGAATGGTGAATTAAGAGAACAAACTTCAATTTCAGCTACACTGTTAAAA
GGTGAACTTCTTGTTTCAATGAAATTTAATGGTACACCAGAAAGTTATGCTGTTGGAGGA
AAATCTTTAGATAATGGTTTTAATCATCTTATCGAAGTTATCAGGAATGCAACACTTGTG
CAAGTAAAAATTAATAATACAGAATACTTTAGAAAAACACTTTCAACAACTGGACAATTG
AATGCTCAAGTTCTTTATTTGGGTGCACCCGAGACATCAATTAATCCAGAAGATAATATC
ATTGATGACAAGGATTATTTCAAAGGAATCATTCAAGATGTTCAATTGTCAAATGGATCG
CATGCAATGACTGTTGAACTTTATCCATTAGAAGATGAAGAAGGACTTAATCTGCCTCCG
CCATTTGGTGAAGTTCATATAGATAGAGATTCAGTTCTTAGAGGAGAAGTTTCTGACGAT
CTTTGTAGAAATATGCCATGCGAACATGGTGCGACTTGTCATAATACATGGAATGATTTT
GTTTGTGAATGCACAAAAGGCTACAAAGGCAAATACTGCCAAGATATTCAGTTCTGTGAA
CTGCACAAGTGTCCTGGACATGCATTTTGCAAAAATCTTGATGATGGCTACGATTGTATT
ACAAATGTGACTTTCAGAGGAACTGAAGACAGTCCATTACAGTATTACTTCGTTTCGCAA
GGAACTGATGATTTAGAAAAGACAAAAGCTTATGAGAAAGTAATTGAAATAGCCTATAGA
ACAAAAATTGGTGGTACTTTATTATATGTTGAAGATGAGCAAGATATGTACTTTGAAATT
GCTTCATATAAAGACCAACTTACAGTTCAATGGCGTCTCTCAACTGAACTTGCAAATGTT
CATAGATTCACACGAGAAAATTCACTGATTTATGATTGGAATTATTTGTATTTGCGTGTA
TCTGAGAATAAACTAGAAGCAGGCTGGAAAGGATGGGAAACTCAAGATATTCAACCTCCA
CTTTCGACGCACATCGATATGAAGGCTTTTGAATACCTCTTTTCTGGAAAATATCCAATT
TCTTTGGGAGGCTCAAATCCAACACGTTCAAATGCAATTTTCAAAGGCCTAAATCTCAAA
GGTTCAACATTCAAAGGATGCATTGGAGAAACGAGAATTGGTGACCTTTTACTGCCTTTC
TTCCCACATTCTGAAATTTATACAGAAAATCTCAAACCACGAGCTCACTATAGTCTAAAT
TCAAGTAGAGTAGACGAAGGCTGTATTTTATGCTTTGAACAAGATTGTCAAAATGGTGGT
GTATGCAAAAATCCTAAAGAAAATTATACTTGCAAATGTCCAATTGGTTATGAAAAAGAT
GATTGTTCACAAAATATCGATGAATGCCTTCAATCAGAATGTACAAATAATTCTACTTGT
ATTGATGGAATTGGCAATTATACTTGCATGTGTTTAGTTGGCTACGAAGGAACTTTCTGT
GAACATGAAATTGATGAATGTAAATCTCAGCCATGTCATAATGGTGGCAATTGCACTGAT
CTGATTGCTGACTTCAAATGTGATTGTAGTGAAGAATATGCTGGAAAACAATGTGATGTT
CTACGATTAGTGACTTGTGAAAATTCACCTTGCAGATCAGGTTCAACTTGTCAAGATGGA
CATAACATCACGACGGGAAATAATTTTACATGCATATGCAAAGAAGGCTTTGAAGGGGCA
CTTTGTGACTACGCTTACTGTCTTGTTGAGCCGTGCAAAAATGATGGAAACTGTTATACA
GATTCAGAAGTGCCAGAGTGTAAATGCCAACTTGGTTTCATGGGAAAATATTGTGAAATT
GATATTGATGATTGTGCCTCAACTCCATGTCAAAATAATGCAACATGCATTGACTTGGTG
AACGATTATAAATGCGAATGTGAAGGAACTGGTTTCACAGGAGAAAATTGTGAAAATGAC
ATTGATGAATGTTTGACAGAAAATATTTCATGTGGCGGTTTGGGAACTTGTATTAATACA
AAAGGATCTTATAAATGTCAATGTAATGAAGGAATGTGTGGATCAGATTGCAATTTAGTA
GATCCTTGTCAAGAAAATGAGTCACCGTGCATGAATGGTGGTAAATGTATTGAAACATGT
GTCACATTCCCTGACTATAGGTGTCAATGTGTTGATGGTTATGCTGGCAAAAATTGCACA
GAACAAGTGCTTTTAGCAACAGGACCAACTGCAGGTGACATTTTAATAATTGTCATTCCA
ATCGTCGTCAGTTTATTAGCTATCGGTGGAATTGTTCTTGCAGTACTTTTAATGATGGCA
AGAAATAAAAGAGCAACGAGAGGAACTTATAGTCCTTCAGCGCAAGAATATTGCAATCCT
CGACTTGAAATGGATTCTGTTTTAAAACAACCACCAGAGGAGAGACTTATCTAA

>g10284.t2 Gene=g10284 Length=1937
MVVWGHSAISFRTCRGGELLSQTYMKHELTVTLSKEGITIGLNHPQQSSRVDTKISARLL
DNQWHTIQFIYRLGTLNLVIDRNSIVLANSTYNRDLLYDQEIKNDAAVLILGRQYYGCLL
HGPGLMFNNSEIRAEGVLFGACPLAPGQCNADHDVLIREVVDHCLNYPCMHGQCISRPDS
YECHCPARYGGNNCDKDYGPPCDKNPCKNRGMCEEDEKGNFKCICDHEHTGKFCEIHVES
HPLCDKNPCLNNGTCRVLPGSNKYECLCLDGFTGMRCETNFNDCDPQPCQNGGRCIDKIN
GFSCDCSQTGYTGDLCQRNIDECNRNPCQNGGICFDNYGSYTCECPSGFGGDNCDQIINE
CQSTCLNGGSCTEQEKGTRCETPIALAFQGECQCQNGGSCVPNSNECICPNGFEGNSCEI
ESRSDCVDGNCACASNPCPANAICSPKSGSTLEYNCECQQGYAGDNCDDIDECINKDICN
HGVCFNKNGSYECFCRPGYTGNNCQFDFDECLSNPCKNGATCYDKINAFECKCAPGYEGK
QCETDIDECKSSPCTKGSTCIDLIANYSCACIAGMTGRNCEIDIDDCASTPCEHGGKCID
QLGGFKCDCSNTGYDGVVCQQNINECESNPCMNGASCIDKINDYTCECFLGYEGKNCEKD
INECDPNPCQYQSTCLERSNQTLYSLHDKTQLPQIFSRKFAYENASGHECICVPGTKGRN
CEININECDSNPCSKYGTCVDGIGMYTCECEPGFQGVHCEEDIDECLMKPCLFGTCIDGR
NNYECDCDEKYGGKNCSVELTGCVSSPCKNDGSCVPYLNLEDETEHLFNCTCKNGFYGRT
CEIVSTMSLVDQSLITVKTNREEGYDIQLRFRTTLPNGVLAFGTADSANSYILELVNGRL
NLHSSLLNKWEGVFIGSQLNDSKWHKVFVAINSSHLVLSANDEQTIYPINFNSYDSTNGS
HVSFPVTYLGGYVNTPFYLRHLTNHVTPTAFIGCMEDVVINNQWVLPGTTGDDVVNLTNI
EKGCKRDEQCNPNPCHSKGLCTDLWYKFSCECQRPHLGPTCKYSIIAATFGHENTTKSAV
FVNVSDSARRAVRSVLDISMFIRTRQPTGKIFYLGSDPKQIYGPNGELREQTSISATLLK
GELLVSMKFNGTPESYAVGGKSLDNGFNHLIEVIRNATLVQVKINNTEYFRKTLSTTGQL
NAQVLYLGAPETSINPEDNIIDDKDYFKGIIQDVQLSNGSHAMTVELYPLEDEEGLNLPP
PFGEVHIDRDSVLRGEVSDDLCRNMPCEHGATCHNTWNDFVCECTKGYKGKYCQDIQFCE
LHKCPGHAFCKNLDDGYDCITNVTFRGTEDSPLQYYFVSQGTDDLEKTKAYEKVIEIAYR
TKIGGTLLYVEDEQDMYFEIASYKDQLTVQWRLSTELANVHRFTRENSLIYDWNYLYLRV
SENKLEAGWKGWETQDIQPPLSTHIDMKAFEYLFSGKYPISLGGSNPTRSNAIFKGLNLK
GSTFKGCIGETRIGDLLLPFFPHSEIYTENLKPRAHYSLNSSRVDEGCILCFEQDCQNGG
VCKNPKENYTCKCPIGYEKDDCSQNIDECLQSECTNNSTCIDGIGNYTCMCLVGYEGTFC
EHEIDECKSQPCHNGGNCTDLIADFKCDCSEEYAGKQCDVLRLVTCENSPCRSGSTCQDG
HNITTGNNFTCICKEGFEGALCDYAYCLVEPCKNDGNCYTDSEVPECKCQLGFMGKYCEI
DIDDCASTPCQNNATCIDLVNDYKCECEGTGFTGENCENDIDECLTENISCGGLGTCINT
KGSYKCQCNEGMCGSDCNLVDPCQENESPCMNGGKCIETCVTFPDYRCQCVDGYAGKNCT
EQVLLATGPTAGDILIIVIPIVVSLLAIGGIVLAVLLMMARNKRATRGTYSPSAQEYCNP
RLEMDSVLKQPPEERLI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
91 g10284.t2 CDD cd00054 EGF_CA 245 278 1.61324E-4
96 g10284.t2 CDD cd00054 EGF_CA 280 317 5.15596E-5
95 g10284.t2 CDD cd00054 EGF_CA 319 354 2.6737E-8
97 g10284.t2 CDD cd00054 EGF_CA 469 505 1.59079E-7
92 g10284.t2 CDD cd00054 EGF_CA 507 543 7.77854E-8
102 g10284.t2 CDD cd00054 EGF_CA 545 581 5.93859E-6
103 g10284.t2 CDD cd00054 EGF_CA 583 620 3.15417E-5
101 g10284.t2 CDD cd00054 EGF_CA 622 658 2.54591E-8
99 g10284.t2 CDD cd00054 EGF_CA 724 760 7.77854E-8
100 g10284.t2 CDD cd00054 EGF_CA 762 796 8.68275E-4
106 g10284.t2 CDD cd00110 LamG 846 1001 9.08439E-20
105 g10284.t2 CDD cd00110 LamG 1090 1236 7.46674E-12
93 g10284.t2 CDD cd00054 EGF_CA 1286 1314 2.17132E-5
90 g10284.t2 CDD cd00054 EGF_CA 1585 1621 5.0753E-6
104 g10284.t2 CDD cd00054 EGF_CA 1624 1658 2.64282E-5
94 g10284.t2 CDD cd00054 EGF_CA 1741 1778 4.49728E-7
98 g10284.t2 CDD cd00054 EGF_CA 1780 1817 3.932E-6
89 g10284.t2 CDD cd00054 EGF_CA 1820 1860 6.03147E-4
83 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 156 197 1.6E-8
69 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 201 240 3.6E-8
80 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 241 281 3.4E-12
59 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 282 319 3.5E-13
68 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 321 388 7.4E-13
81 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 389 424 5.8E-7
63 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 432 469 5.9E-7
62 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 470 508 2.1E-9
72 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 509 547 1.2E-15
73 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 548 585 7.5E-14
78 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 586 622 7.5E-11
77 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 624 661 9.1E-15
74 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 662 725 9.3E-11
66 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 726 761 2.1E-13
79 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 762 799 2.5E-9
65 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 802 847 1.1E-8
84 g10284.t2 Gene3D G3DSA:2.60.120.200 - 848 1013 1.9E-24
60 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 1025 1063 4.0E-6
85 g10284.t2 Gene3D G3DSA:2.60.120.200 - 1077 1246 7.4E-16
70 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 1280 1349 1.1E-10
64 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 1550 1587 2.7E-6
76 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 1588 1622 2.7E-11
71 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 1623 1660 1.1E-11
82 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 1661 1706 2.5E-7
61 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 1707 1742 3.2E-7
75 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 1743 1779 2.8E-14
58 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 1780 1819 2.2E-7
67 g10284.t2 Gene3D G3DSA:2.10.25.10 Laminin 1820 1863 2.3E-8
22 g10284.t2 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 160 308 0.0
28 g10284.t2 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 160 308 0.0
20 g10284.t2 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 304 475 0.0
26 g10284.t2 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 304 475 0.0
25 g10284.t2 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 365 534 0.0
31 g10284.t2 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 365 534 0.0
21 g10284.t2 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 472 1548 0.0
27 g10284.t2 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 472 1548 0.0
23 g10284.t2 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 1551 1786 0.0
29 g10284.t2 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 1551 1786 0.0
24 g10284.t2 PANTHER PTHR24049:SF19 PROTEIN CRUMBS HOMOLOG 2 1787 1937 0.0
30 g10284.t2 PANTHER PTHR24049 CRUMBS FAMILY MEMBER 1787 1937 0.0
35 g10284.t2 PRINTS PR00010 Type II EGF-like signature 319 330 6.5E-5
34 g10284.t2 PRINTS PR00010 Type II EGF-like signature 331 338 6.5E-5
32 g10284.t2 PRINTS PR00010 Type II EGF-like signature 339 349 6.5E-5
33 g10284.t2 PRINTS PR00010 Type II EGF-like signature 576 582 6.5E-5
15 g10284.t2 Pfam PF12661 Human growth factor-like EGF 169 186 0.019
7 g10284.t2 Pfam PF00008 EGF-like domain 244 274 5.1E-7
3 g10284.t2 Pfam PF00008 EGF-like domain 284 314 1.0E-7
8 g10284.t2 Pfam PF00008 EGF-like domain 323 353 5.9E-8
13 g10284.t2 Pfam PF12661 Human growth factor-like EGF 394 413 0.0099
16 g10284.t2 Pfam PF07645 Calcium-binding EGF domain 469 503 2.1E-6
1 g10284.t2 Pfam PF00008 EGF-like domain 511 540 4.9E-7
6 g10284.t2 Pfam PF00008 EGF-like domain 587 616 1.4E-5
2 g10284.t2 Pfam PF00008 EGF-like domain 626 656 2.8E-8
10 g10284.t2 Pfam PF00008 EGF-like domain 728 757 3.6E-8
18 g10284.t2 Pfam PF00054 Laminin G domain 871 1005 2.4E-21
19 g10284.t2 Pfam PF00054 Laminin G domain 1102 1239 3.1E-17
9 g10284.t2 Pfam PF00008 EGF-like domain 1282 1312 2.9E-6
11 g10284.t2 Pfam PF00008 EGF-like domain 1551 1577 1.5E-5
14 g10284.t2 Pfam PF12661 Human growth factor-like EGF 1594 1615 0.0014
5 g10284.t2 Pfam PF00008 EGF-like domain 1627 1656 2.9E-5
12 g10284.t2 Pfam PF00008 EGF-like domain 1745 1776 4.5E-8
17 g10284.t2 Pfam PF07645 Calcium-binding EGF domain 1780 1811 1.0E-5
4 g10284.t2 Pfam PF00008 EGF-like domain 1823 1858 2.1E-6
87 g10284.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 1873 -
88 g10284.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 1874 1897 -
86 g10284.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1898 1937 -
184 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 183 194 -
191 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 223 234 -
164 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 266 277 -
188 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 266 277 -
211 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 295 306 -
203 g10284.t2 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 319 343 -
207 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 334 345 -
162 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 343 354 -
185 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 343 354 -
172 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 407 418 -
194 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 407 418 -
169 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 456 467 -
179 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 456 467 -
208 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 484 495 -
160 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 493 504 -
183 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 493 504 -
201 g10284.t2 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 507 531 -
205 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 522 533 -
171 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 531 542 -
182 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 531 542 -
213 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 560 571 -
189 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 569 580 -
217 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 598 609 -
202 g10284.t2 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 622 646 -
209 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 637 648 -
161 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 646 657 -
186 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 646 657 -
180 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 710 721 -
195 g10284.t2 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 724 748 -
219 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 739 750 -
163 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 748 759 -
187 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 748 759 -
197 g10284.t2 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 762 785 -
214 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 776 787 -
192 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 785 796 -
165 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 830 841 -
190 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 830 841 -
212 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1041 1052 -
175 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 1050 1061 -
218 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1293 1304 -
159 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 1302 1313 -
174 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 1302 1313 -
216 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1562 1573 -
166 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 1571 1582 -
199 g10284.t2 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 1578 1609 -
210 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1600 1611 -
167 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 1609 1620 -
177 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 1609 1620 -
196 g10284.t2 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 1623 1647 -
215 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1638 1649 -
176 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 1647 1658 -
158 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 1691 1702 -
173 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 1691 1702 -
170 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 1727 1738 -
193 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 1727 1738 -
198 g10284.t2 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 1741 1765 -
206 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1756 1767 -
200 g10284.t2 ProSitePatterns PS01187 Calcium-binding EGF-like domain signature. 1780 1806 -
204 g10284.t2 ProSitePatterns PS00010 Aspartic acid and asparagine hydroxylation site. 1797 1808 -
181 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 1806 1817 -
168 g10284.t2 ProSitePatterns PS01186 EGF-like domain signature 2. 1848 1859 -
178 g10284.t2 ProSitePatterns PS00022 EGF-like domain signature 1. 1848 1859 -
222 g10284.t2 ProSiteProfiles PS50025 Laminin G domain profile. 1 149 12.557
241 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 160 195 14.749
225 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 198 235 17.71
223 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 240 278 21.095
234 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 280 317 21.587
232 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 319 355 24.607
240 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 357 381 9.27
239 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 388 419 13.905
245 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 432 468 12.16
235 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 469 505 16.907
227 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 507 543 23.904
242 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 545 581 19.587
246 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 583 620 20.091
243 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 622 658 23.808
248 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 660 722 9.208
236 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 724 760 22.725
230 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 762 797 15.533
238 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 799 842 15.497
221 g10284.t2 ProSiteProfiles PS50025 Laminin G domain profile. 844 1024 24.113
233 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 1026 1062 13.704
220 g10284.t2 ProSiteProfiles PS50025 Laminin G domain profile. 1071 1282 15.049
237 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 1278 1314 19.929
231 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 1549 1583 12.162
226 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 1585 1621 20.87
249 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 1623 1659 20.782
247 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 1662 1703 16.945
244 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 1704 1739 12.547
229 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 1741 1778 22.305
224 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 1780 1818 12.772
228 g10284.t2 ProSiteProfiles PS50026 EGF-like domain profile. 1819 1860 16.58
129 g10284.t2 SMART SM00179 egfca_6 161 195 0.0019
134 g10284.t2 SMART SM00181 egf_5 163 195 3.3E-4
136 g10284.t2 SMART SM00181 egf_5 201 235 0.069
113 g10284.t2 SMART SM00179 egfca_6 203 235 0.065
141 g10284.t2 SMART SM00181 egf_5 243 278 5.0E-7
112 g10284.t2 SMART SM00179 egfca_6 245 278 0.011
118 g10284.t2 SMART SM00179 egfca_6 280 317 1.0E-7
146 g10284.t2 SMART SM00181 egf_5 283 317 9.6E-5
117 g10284.t2 SMART SM00179 egfca_6 319 355 5.7E-10
143 g10284.t2 SMART SM00181 egf_5 322 355 7.6E-7
151 g10284.t2 SMART SM00181 egf_5 379 419 0.025
122 g10284.t2 SMART SM00179 egfca_6 428 468 1.2
155 g10284.t2 SMART SM00181 egf_5 432 468 0.0039
119 g10284.t2 SMART SM00179 egfca_6 469 505 1.1E-10
148 g10284.t2 SMART SM00181 egf_5 472 505 5.9E-6
114 g10284.t2 SMART SM00179 egfca_6 507 543 3.5E-12
147 g10284.t2 SMART SM00181 egf_5 510 543 1.1E-7
124 g10284.t2 SMART SM00179 egfca_6 545 581 1.1E-10
145 g10284.t2 SMART SM00181 egf_5 548 581 5.2E-5
126 g10284.t2 SMART SM00179 egfca_6 583 620 2.2E-8
156 g10284.t2 SMART SM00181 egf_5 586 620 0.0018
125 g10284.t2 SMART SM00179 egfca_6 622 658 3.9E-11
139 g10284.t2 SMART SM00181 egf_5 625 658 2.2E-7
157 g10284.t2 SMART SM00181 egf_5 663 722 0.14
121 g10284.t2 SMART SM00179 egfca_6 724 760 6.1E-10
138 g10284.t2 SMART SM00181 egf_5 727 760 2.2E-6
116 g10284.t2 SMART SM00179 egfca_6 762 797 4.5E-7
140 g10284.t2 SMART SM00181 egf_5 765 797 0.0025
142 g10284.t2 SMART SM00181 egf_5 802 842 0.0046
131 g10284.t2 SMART SM00282 LamG_3 863 1003 2.9E-21
120 g10284.t2 SMART SM00179 egfca_6 1027 1062 0.49
153 g10284.t2 SMART SM00181 egf_5 1029 1062 16.0
130 g10284.t2 SMART SM00282 LamG_3 1094 1239 1.2E-12
123 g10284.t2 SMART SM00179 egfca_6 1278 1314 1.2E-4
154 g10284.t2 SMART SM00181 egf_5 1281 1314 3.4E-5
109 g10284.t2 SMART SM00179 egfca_6 1543 1583 0.015
135 g10284.t2 SMART SM00181 egf_5 1550 1583 5.2E-4
111 g10284.t2 SMART SM00179 egfca_6 1585 1621 1.8E-9
150 g10284.t2 SMART SM00181 egf_5 1588 1621 1.0E-4
128 g10284.t2 SMART SM00179 egfca_6 1623 1659 2.1E-8
144 g10284.t2 SMART SM00181 egf_5 1626 1659 1.4E-4
132 g10284.t2 SMART SM00181 egf_5 1665 1703 0.0016
127 g10284.t2 SMART SM00179 egfca_6 1666 1703 0.86
152 g10284.t2 SMART SM00181 egf_5 1706 1739 0.0083
115 g10284.t2 SMART SM00179 egfca_6 1741 1778 8.7E-10
149 g10284.t2 SMART SM00181 egf_5 1744 1778 4.5E-6
108 g10284.t2 SMART SM00179 egfca_6 1780 1818 2.6E-6
133 g10284.t2 SMART SM00181 egf_5 1783 1818 0.69
110 g10284.t2 SMART SM00179 egfca_6 1820 1860 0.15
137 g10284.t2 SMART SM00181 egf_5 1822 1860 3.8E-5
53 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 159 198 3.45E-7
45 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 201 240 2.43E-6
55 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 243 279 1.13E-9
40 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 280 323 4.54E-8
51 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 319 362 4.19E-11
41 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 469 506 1.46E-7
44 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 507 548 7.26E-12
46 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 544 587 2.74E-11
42 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 583 626 6.64E-8
56 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 622 664 9.31E-12
54 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 724 767 6.13E-11
48 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 758 799 4.01E-7
38 g10284.t2 SUPERFAMILY SSF49899 Concanavalin A-like lectins/glucanases 830 1024 1.76E-26
37 g10284.t2 SUPERFAMILY SSF49899 Concanavalin A-like lectins/glucanases 1050 1238 7.52E-16
52 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 1277 1314 7.23E-8
36 g10284.t2 SUPERFAMILY SSF49899 Concanavalin A-like lectins/glucanases 1281 1523 3.89E-6
43 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 1551 1589 3.36E-6
57 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 1585 1623 4.61E-9
47 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 1623 1660 1.82E-9
50 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 1664 1707 8.21E-7
39 g10284.t2 SUPERFAMILY SSF57184 Growth factor receptor domain 1728 1860 9.73E-7
49 g10284.t2 SUPERFAMILY SSF57196 EGF/Laminin 1741 1785 8.98E-10
107 g10284.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 1875 1897 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005509 calcium ion binding MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values