General information for g10286.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Uridine-cytidine kinase 2-A.
Parent gene
- The parent gene g10286 is located on chr_1: 8652184..8652916 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10286 | g10286.t10 | isoform | g10286.t10 | 8646649 | 8652352 |
| chr_1 | g10286 | g10286.t10 | exon | g10286.t10.exon1 | 8646649 | 8647172 |
| chr_1 | g10286 | g10286.t10 | TTS | g10286.t10 | 8646662 | 8646662 |
| chr_1 | g10286 | g10286.t10 | cds | g10286.t10.CDS1 | 8647084 | 8647172 |
| chr_1 | g10286 | g10286.t10 | exon | g10286.t10.exon2 | 8648271 | 8648420 |
| chr_1 | g10286 | g10286.t10 | cds | g10286.t10.CDS2 | 8648271 | 8648420 |
| chr_1 | g10286 | g10286.t10 | exon | g10286.t10.exon3 | 8650218 | 8650248 |
| chr_1 | g10286 | g10286.t10 | cds | g10286.t10.CDS3 | 8650218 | 8650248 |
| chr_1 | g10286 | g10286.t10 | exon | g10286.t10.exon4 | 8651489 | 8651618 |
| chr_1 | g10286 | g10286.t10 | cds | g10286.t10.CDS4 | 8651489 | 8651545 |
| chr_1 | g10286 | g10286.t10 | exon | g10286.t10.exon5 | 8651753 | 8652162 |
| chr_1 | g10286 | g10286.t10 | exon | g10286.t10.exon6 | 8652319 | 8652352 |
| chr_1 | g10286 | g10286.t10 | TSS | g10286.t10 | 8652415 | 8652415 |
Sequences
>g10286.t10 Gene=g10286 Length=1279
ATGGAAATTGAACCTAAAAAACCTTTCCTAATAGGAGTTGCAGGAGGTACCGCAAGTGGC
AAAAGTTCAGTATGTAAGCGAATTATTGAAAAATTGGGACAAGCTGACATAAATGAACGA
CAACGTCAAGTAGTAAGCATTAGCCAGGATTCCTTTTATCGTGAACTTACAGAAGAAGAG
AAAATTAAGGCGCAAAAGGGGCAGTTTAATTTTGATCATCCTCAATCTTTTGACGAAGAG
TTAATGTACACAACAATGAAGCAAATTTTATCAGGCGAAACAGTTGTATTGCACTCATAT
GATTACAAGACAAACTCTAAATCTACTGAAAAGATTACAATTTATCCAGCTGATGTTGTA
CTTTTTGAAGGAATTTTGGTCTTTTATTTTCCGTCTATTCGCGATCTCTTTCATATGAAG
TTGTTTGTTGATACAGATTCGTAAACTTGCAAGAAGAGTACCTCGTGACATAAAAGAAAG
AGGAAGAGATCTTGATCAGGTTTTAAATCAGTATATGATGTTTGTTAAGCCAGCTTTTGA
AGAGTTTTGTTCACCAACAAAAAAATATGCTGATGTTATTATCCCACGAGGGGTCGACAA
TTTGGTTGCTATTGACTTGATTGTTCAACATCTTAGAGACTTTTTGAGTGACCGTTTATC
TGCTGATTCCATGACTCTCTCACCAACAACAACACCGGCATTAAATAACAATGCCTCGTC
ATCAGCTACTGCTATGAATGGAGGTTCACGCGGAGATGAACTCCTACAGACGGCATTGAG
AAGACTCTCATCCTCTGTTATCAATCGAAAATTATTTACAATACTCTATGACAGACATAT
TTAATGAGAAAAATAGCAATAGACAAAAAAAAACCTTACTAAATATCGCATAAATGATAT
CATTTGCCTATAATAAATTTATAAAATTTCTTCGAATTTAAAAAAAATTTCGTTACTAAA
GAGTTTGATCTCTCTATTTCTTGATTTAAAAATTTATAAAACTATTATTATTTACAATTT
GAGGCATACATAAATCTATTTTTATTATTTGACAAATTTATTATAATGAAGAAAGAATTT
ATAGGTTTTAAAATAATACAATGTAGTTTAATAGTTAAAAAAGATAAGAAAAGAAGTAAA
TAATATTTGTGATGGGTGTATTTTTTTTTTCTCAAAACCTTATTTTGATGATGTAAAAAT
ATGTTGACAACTTTATATTAAAAAATGAGATGTAAAATAATAAAGCAAGATGGATATTTT
CTTATCAAAACTGTGTTTT
>g10286.t10 Gene=g10286 Length=108
MFVKPAFEEFCSPTKKYADVIIPRGVDNLVAIDLIVQHLRDFLSDRLSADSMTLSPTTTP
ALNNNASSSATAMNGGSRGDELLQTALRRLSSSVINRKLFTILYDRHI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10286.t10 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 52 | 0 |
| 1 | g10286.t10 | PANTHER | PTHR10285 | URIDINE KINASE | 2 | 46 | 0 |
| 2 | g10286.t10 | PANTHER | PTHR10285:SF66 | URIDINE-CYTIDINE KINASE 1 | 2 | 46 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0019206 | nucleoside kinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
