Gene loci information

Transcript annotation

  • This transcript has been annotated as Uridine-cytidine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10286 g10286.t11 TTS g10286.t11 8646662 8646662
chr_1 g10286 g10286.t11 isoform g10286.t11 8646893 8652352
chr_1 g10286 g10286.t11 exon g10286.t11.exon1 8646893 8647172
chr_1 g10286 g10286.t11 exon g10286.t11.exon2 8648271 8648420
chr_1 g10286 g10286.t11 exon g10286.t11.exon3 8650218 8650248
chr_1 g10286 g10286.t11 exon g10286.t11.exon4 8651489 8651626
chr_1 g10286 g10286.t11 cds g10286.t11.CDS1 8651590 8651626
chr_1 g10286 g10286.t11 exon g10286.t11.exon5 8651757 8652162
chr_1 g10286 g10286.t11 cds g10286.t11.CDS2 8651757 8652162
chr_1 g10286 g10286.t11 exon g10286.t11.exon6 8652319 8652352
chr_1 g10286 g10286.t11 cds g10286.t11.CDS3 8652319 8652352
chr_1 g10286 g10286.t11 TSS g10286.t11 8652415 8652415

Sequences

>g10286.t11 Gene=g10286 Length=1039
ATGGAAATTGAACCTAAAAAACCTTTCCTAATAGGAGTTGCAGGAGGTACCGCAAGTGGC
AAAAGTTCAGTATGTAAGCGAATTATTGAAAAATTGGGACAAGCTGACATAAATGAACGA
CAACGTCAAGTAGTAAGCATTAGCCAGGATTCCTTTTATCGTGAACTTACAGAAGAAGAG
AAAATTAAGGCGCAAAAGGGGCAGTTTAATTTTGATCATCCTCAATCTTTTGACGAAGAG
TTAATGTACACAACAATGAAGCAAATTTTATCAGGCGAAACAGTTGTATTGCACTCATAT
GATTACAAGACAAACTCTAAATCTACTGAAAAGATTACAATTTATCCAGCTGATGTTGTA
CTTTTTGAAGGAATTTTGGTCTTTTATTTTCCGTCTATTCGCGATCTCTTTCATATGAAG
TTGTTTGTTGATACAGATTCATTTAAAGACTTGCAAGAAGAGTACCTCGTGACATAAAAG
AAAGAGGAAGAGATCTTGATCAGGTTTTAAATCAGTATATGATGTTTGTTAAGCCAGCTT
TTGAAGAGTTTTGTTCACCAACAAAAAAATATGCTGATGTTATTATCCCACGAGGGGTCG
ACAATTTGGTTGCTATTGACTTGATTGTTCAACATCTTAGAGACTTTTTGAGTGACCGTT
TATCTGCTGATTCCATGACTCTCTCACCAACAACAACACCGGCATTAAATAACAATGCCT
CGTCATCAGCTACTGCTATGAATGGAGGTTCACGCGGAGATGAACTCCTACAGACGGCAT
TGAGAAGACTCTCATCCTCTGTTATCAATCGAAAATTATTTACAATACTCTATGACAGAC
ATATTTAATGAGAAAAATAGCAATAGACAAAAAAAAACCTTACTAAATATCGCATAAATG
ATATCATTTGCCTATAATAAATTTATAAAATTTCTTCGAATTTAAAAAAAATTTCGTTAC
TAAAGAGTTTGATCTCTCTATTTCTTGATTTAAAAATTTATAAAACTATTATTATTTACA
ATTTGAGGCATACATAAAT

>g10286.t11 Gene=g10286 Length=158
MEIEPKKPFLIGVAGGTASGKSSVCKRIIEKLGQADINERQRQVVSISQDSFYRELTEEE
KIKAQKGQFNFDHPQSFDEELMYTTMKQILSGETVVLHSYDYKTNSKSTEKITIYPADVV
LFEGILVFYFPSIRDLFHMKLFVDTDSFKDLQEEYLVT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g10286.t11 CDD cd02023 UMPK 10 147 0e+00
7 g10286.t11 Gene3D G3DSA:3.40.50.300 - 6 156 0e+00
2 g10286.t11 PANTHER PTHR10285 URIDINE KINASE 6 147 0e+00
3 g10286.t11 PANTHER PTHR10285:SF66 URIDINE-CYTIDINE KINASE 1 6 147 0e+00
5 g10286.t11 PRINTS PR00988 Uridine kinase signature 8 25 8e-07
4 g10286.t11 PRINTS PR00988 Uridine kinase signature 92 107 8e-07
1 g10286.t11 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 10 147 0e+00
6 g10286.t11 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 4 147 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0019206 nucleoside kinase activity MF
GO:0016301 kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values