Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Uridine-cytidine kinase 2-A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10286 g10286.t14 TTS g10286.t14 8646662 8646662
chr_1 g10286 g10286.t14 isoform g10286.t14 8647632 8652352
chr_1 g10286 g10286.t14 exon g10286.t14.exon1 8647632 8648420
chr_1 g10286 g10286.t14 cds g10286.t14.CDS1 8648212 8648420
chr_1 g10286 g10286.t14 exon g10286.t14.exon2 8650218 8650248
chr_1 g10286 g10286.t14 cds g10286.t14.CDS2 8650218 8650248
chr_1 g10286 g10286.t14 exon g10286.t14.exon3 8651489 8651623
chr_1 g10286 g10286.t14 cds g10286.t14.CDS3 8651489 8651548
chr_1 g10286 g10286.t14 exon g10286.t14.exon4 8651757 8652162
chr_1 g10286 g10286.t14 exon g10286.t14.exon5 8652319 8652352
chr_1 g10286 g10286.t14 TSS g10286.t14 8652415 8652415

Sequences

>g10286.t14 Gene=g10286 Length=1395
ATGGAAATTGAACCTAAAAAACCTTTCCTAATAGGAGTTGCAGGAGGTACCGCAAGTGGC
AAAAGTTCAGTATGTAAGCGAATTATTGAAAAATTGGGACAAGCTGACATAAATGAACGA
CAACGTCAAGTAGTAAGCATTAGCCAGGATTCCTTTTATCGTGAACTTACAGAAGAAGAG
AAAATTAAGGCGCAAAAGGGGCAGTTTAATTTTGATCATCCTCAATCTTTTGACGAAGAG
TTAATGTACACAACAATGAAGCAAATTTTATCAGGCGAAACAGTTGTATTGCACTCATAT
GATTACAAGACAAACTCTAAATCTACTGAAAAGATTACAATTTATCCAGCTGATGTTGTA
CTTTTTGAAGGAATTTTGGTCTTTTATTTTCCGTCTATTCGCGATCTCTTTCATATGAAG
TTGTTTGTTGATACAGATTCTAAAGACTTGCAAGAAGAGTACCTCGTGACATAAAAGAAA
GAGGAAGAGATCTTGATCAGGTTTTAAATCAGTATATGATGTTTGTTAAGCCAGCTTTTG
AAGAGTTTTGTTCACCAACAAAAAAATATGCTGATGTTATTATCCCACGAGGGGTCGACA
ATTTGGTTGCTATTGACTTGATTGTTCAACATCTTAGAGACTTTTTGAGTGACCGTTTAT
CTGCTGATTCCATGACTCTCTCACCAACAACAACACCGGCATTAAATAACAATGCCTCGT
CATCAGCTACTGCTATGAATGGAGGTTCACGCGGAGGTAAGAACAAGAACATTCATTTTA
ATGGCGATCCAAGTCTAAGAAATAGACCACACTAAAAAGTAACAGTCAAAATTTTATTAA
ACTCACTTCACCTTTTTGCGAATCATCCCTTCCTTTTCCAAATTTTAACACAGAAGCCAA
AGTTTTGACATTCGCACGGATCGTACAAGAGTAAACAAATATGTTAATTTAAGAAAATAA
GAAGAACTTATCTTAAAGACTACATATGATTAGTGTTTAATGTTGAATCATAGATTAATT
ATTAATTTAGTTGCTAAAAAAAGAACAAACCTTTTTAACTCACCTATATCATTTTAATAT
CTATAAAAGTTTATATTATTATGCTTATAAATATATTAAAATTAACAATATTTTGTGCTT
TATTTAAATTTTGTTGTATTGTACCTTTAAAAATAAGTAAGTAAATAAGTAGACATTAAG
TATTAAATTAACTTTTGCCTATTTGATTAATTCAATATGAAGGAATATATTGTAATCGCT
TTAATTATTAGAAGAACATCATGCATCATATAACAAAAAACAATCACTTTATCATCATCA
CTTTTATATTCGCTAAAGATTTATTTAAAACGAAAAAAAATAATTTTTTCCTCTTTGACA
ATTTTTTTTCTTTAA

>g10286.t14 Gene=g10286 Length=99
MMFVKPAFEEFCSPTKKYADVIIPRGVDNLVAIDLIVQHLRDFLSDRLSADSMTLSPTTT
PALNNNASSSATAMNGGSRGGKNKNIHFNGDPSLRNRPH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g10286.t14 Gene3D G3DSA:3.40.50.300 - 1 54 2.5E-9
3 g10286.t14 MobiDBLite mobidb-lite consensus disorder prediction 58 99 -
4 g10286.t14 MobiDBLite mobidb-lite consensus disorder prediction 58 79 -
1 g10286.t14 PANTHER PTHR10285 URIDINE KINASE 2 67 6.9E-20
2 g10286.t14 PANTHER PTHR10285:SF131 URIDINE-CYTIDINE KINASE 2 2 67 6.9E-20

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0019206 nucleoside kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values