Gene loci information

Transcript annotation

  • This transcript has been annotated as Uridine-cytidine kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10286 g10286.t20 TTS g10286.t20 8647558 8647558
chr_1 g10286 g10286.t20 isoform g10286.t20 8648212 8652352
chr_1 g10286 g10286.t20 exon g10286.t20.exon1 8648212 8648998
chr_1 g10286 g10286.t20 exon g10286.t20.exon2 8650218 8650248
chr_1 g10286 g10286.t20 exon g10286.t20.exon3 8651489 8651618
chr_1 g10286 g10286.t20 exon g10286.t20.exon4 8651753 8652153
chr_1 g10286 g10286.t20 cds g10286.t20.CDS1 8651753 8652153
chr_1 g10286 g10286.t20 exon g10286.t20.exon5 8652319 8652352
chr_1 g10286 g10286.t20 cds g10286.t20.CDS2 8652319 8652352
chr_1 g10286 g10286.t20 TSS g10286.t20 8652415 8652415

Sequences

>g10286.t20 Gene=g10286 Length=1383
ATGGAAATTGAACCTAAAAAACCTTTCCTAATAGGAGGTACCGCAAGTGGCAAAAGTTCA
GTATGTAAGCGAATTATTGAAAAATTGGGACAAGCTGACATAAATGAACGACAACGTCAA
GTAGTAAGCATTAGCCAGGATTCCTTTTATCGTGAACTTACAGAAGAAGAGAAAATTAAG
GCGCAAAAGGGGCAGTTTAATTTTGATCATCCTCAATCTTTTGACGAAGAGTTAATGTAC
ACAACAATGAAGCAAATTTTATCAGGCGAAACAGTTGTATTGCACTCATATGATTACAAG
ACAAACTCTAAATCTACTGAAAAGATTACAATTTATCCAGCTGATGTTGTACTTTTTGAA
GGAATTTTGGTCTTTTATTTTCCGTCTATTCGCGATCTCTTTCATATGAAGTTGTTTGTT
GATACAGATTCGTAAACTTGCAAGAAGAGTACCTCGTGACATAAAAGAAAGAGGAAGAGA
TCTTGATCAGGTTTTAAATCAGTATATGATGTTTGTTAAGCCAGCTTTTGAAGAGTTTTG
TTCACCAACAAAAAAATATGCTGATGTTATTATCCCACGAGGGGTCGACAATTTGGTTGC
AATAAGCCTCATTGTGCATCACATCAACGAAATTTTACACCCGACTACTAATTCTACCAC
TACGAATGGAACTAATGGTCATTACACAAATGGATCCTTGTATTTATAATACAATCGATG
CTATCATATAATTATTCCATCACATGAATAACAAACATGTTTGTTTATCGATTTTTTTCA
ATCAGTGAAAAACTTTCCATACATTAAATTTGCACAAAATTTGTGTATTGCATTCCTTTA
TTTAGACTCGTATGAAGATTAAACAAAATTGGATTACACATTCCTTGAAAAAAATTACAA
AAAAATTGTATACTGGCATGCTAAAAAATGTCTCATCTCTTTTTATACCTCGTAATAATC
ACTTCCACAATTCTATATGTAAAAAAATAGTCTATATCTAAAAGATCATTGTAAAATAAA
TGTGAATTTTTTGTATCAATTTTTATATGATATAACAATTCAGAGCCTTTAAAATGATAA
ATTTATGGAGAAAGATATGAAATGAAATAAAAACAAACCATATATCTTAATAATCATGAA
AAATCTTCATTTACTTTTCTTTATCATCAAATAGTTGCTATTGACTTGATTGTTCAACAT
CTTAGAGACTTTTTGAGTGACCGTTTATCTGCTGATTCCATGACTCTCTCACCAACAACA
ACACCGGCATTAAATAACAATGCCTCGTCATCAGCTACTGCTATGAATGGAGGTTCACGC
GGAGGTAAGAACAAGAACATTCATTTTAATGGCGATCCAAGTCTAAGAAATAGACCACAC
TAA

>g10286.t20 Gene=g10286 Length=144
MEIEPKKPFLIGGTASGKSSVCKRIIEKLGQADINERQRQVVSISQDSFYRELTEEEKIK
AQKGQFNFDHPQSFDEELMYTTMKQILSGETVVLHSYDYKTNSKSTEKITIYPADVVLFE
GILVFYFPSIRDLFHMKLFVDTDS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g10286.t20 Gene3D G3DSA:3.40.50.300 - 8 144 0
2 g10286.t20 PANTHER PTHR10285 URIDINE KINASE 7 144 0
3 g10286.t20 PANTHER PTHR10285:SF66 URIDINE-CYTIDINE KINASE 1 7 144 0
1 g10286.t20 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 12 143 0
4 g10286.t20 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 9 143 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0019206 nucleoside kinase activity MF
GO:0016301 kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed