General information for g10286.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Uridine-cytidine kinase.
Parent gene
- The parent gene g10286 is located on chr_1: 8652184..8652916 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10286 | g10286.t3 | isoform | g10286.t3 | 8646649 | 8652171 |
| chr_1 | g10286 | g10286.t3 | exon | g10286.t3.exon1 | 8646649 | 8647172 |
| chr_1 | g10286 | g10286.t3 | TTS | g10286.t3 | 8646662 | 8646662 |
| chr_1 | g10286 | g10286.t3 | exon | g10286.t3.exon2 | 8648271 | 8648420 |
| chr_1 | g10286 | g10286.t3 | exon | g10286.t3.exon3 | 8650218 | 8650248 |
| chr_1 | g10286 | g10286.t3 | exon | g10286.t3.exon4 | 8651489 | 8651623 |
| chr_1 | g10286 | g10286.t3 | exon | g10286.t3.exon5 | 8651753 | 8652171 |
| chr_1 | g10286 | g10286.t3 | cds | g10286.t3.CDS1 | 8651753 | 8651953 |
| chr_1 | g10286 | g10286.t3 | TSS | g10286.t3 | 8652415 | 8652415 |
Sequences
>g10286.t3 Gene=g10286 Length=1259
TTTTCTCAGGAGTTGCAGGAGGTACCGCAAGTGGCAAAAGTTCAGTATGTAAGCGAATTA
TTGAAAAATTGGGACAAGCTGACATAAATGAACGACAACGTCAAGTAGTAAGCATTAGCC
AGGATTCCTTTTATCGTGAACTTACAGAAGAAGAGAAAATTAAGGCGCAAAAGGGGCAGT
TTAATTTTGATCATCCTCAATCTTTTGACGAAGAGTTAATGTACACAACAATGAAGCAAA
TTTTATCAGGCGAAACAGTTGTATTGCACTCATATGATTACAAGACAAACTCTAAATCTA
CTGAAAAGATTACAATTTATCCAGCTGATGTTGTACTTTTTGAAGGAATTTTGGTCTTTT
ATTTTCCGTCTATTCGCGATCTCTTTCATATGAAGTTGTTTGTTGATACAGATTCGTAAT
AAAGACTTGCAAGAAGAGTACCTCGTGACATAAAAGAAAGAGGAAGAGATCTTGATCAGG
TTTTAAATCAGTATATGATGTTTGTTAAGCCAGCTTTTGAAGAGTTTTGTTCACCAACAA
AAAAATATGCTGATGTTATTATCCCACGAGGGGTCGACAATTTGGTTGCTATTGACTTGA
TTGTTCAACATCTTAGAGACTTTTTGAGTGACCGTTTATCTGCTGATTCCATGACTCTCT
CACCAACAACAACACCGGCATTAAATAACAATGCCTCGTCATCAGCTACTGCTATGAATG
GAGGTTCACGCGGAGATGAACTCCTACAGACGGCATTGAGAAGACTCTCATCCTCTGTTA
TCAATCGAAAATTATTTACAATACTCTATGACAGACATATTTAATGAGAAAAATAGCAAT
AGACAAAAAAAAACCTTACTAAATATCGCATAAATGATATCATTTGCCTATAATAAATTT
ATAAAATTTCTTCGAATTTAAAAAAAATTTCGTTACTAAAGAGTTTGATCTCTCTATTTC
TTGATTTAAAAATTTATAAAACTATTATTATTTACAATTTGAGGCATACATAAATCTATT
TTTATTATTTGACAAATTTATTATAATGAAGAAAGAATTTATAGGTTTTAAAATAATACA
ATGTAGTTTAATAGTTAAAAAAGATAAGAAAAGAAGTAAATAATATTTGTGATGGGTGTA
TTTTTTTTTTCTCAAAACCTTATTTTGATGATGTAAAAATATGTTGACAACTTTATATTA
AAAAATGAGATGTAAAATAATAAAGCAAGATGGATATTTTCTTATCAAAACTGTGTTTT
>g10286.t3 Gene=g10286 Length=66
MYTTMKQILSGETVVLHSYDYKTNSKSTEKITIYPADVVLFEGILVFYFPSIRDLFHMKL
FVDTDS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10286.t3 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 66 | 1.1E-15 |
| 2 | g10286.t3 | PANTHER | PTHR10285 | URIDINE KINASE | 1 | 66 | 1.2E-24 |
| 3 | g10286.t3 | PANTHER | PTHR10285:SF66 | URIDINE-CYTIDINE KINASE 1 | 1 | 66 | 1.2E-24 |
| 1 | g10286.t3 | Pfam | PF00485 | Phosphoribulokinase / Uridine kinase family | 1 | 65 | 7.1E-10 |
| 8 | g10286.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 30 | - |
| 9 | g10286.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 31 | 49 | - |
| 7 | g10286.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 50 | 66 | - |
| 5 | g10286.t3 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 5 | 65 | 6.76E-5 |
| 4 | g10286.t3 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 31 | 53 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0019206 | nucleoside kinase activity | MF |
| GO:0016301 | kinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
