Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Uridine-cytidine kinase 2-A.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10286 g10286.t8 isoform g10286.t8 8646649 8652352
chr_1 g10286 g10286.t8 exon g10286.t8.exon1 8646649 8647172
chr_1 g10286 g10286.t8 TTS g10286.t8 8646662 8646662
chr_1 g10286 g10286.t8 cds g10286.t8.CDS1 8647084 8647172
chr_1 g10286 g10286.t8 exon g10286.t8.exon2 8648271 8648420
chr_1 g10286 g10286.t8 cds g10286.t8.CDS2 8648271 8648420
chr_1 g10286 g10286.t8 exon g10286.t8.exon3 8650218 8650248
chr_1 g10286 g10286.t8 cds g10286.t8.CDS3 8650218 8650248
chr_1 g10286 g10286.t8 exon g10286.t8.exon4 8651489 8651609
chr_1 g10286 g10286.t8 cds g10286.t8.CDS4 8651489 8651545
chr_1 g10286 g10286.t8 exon g10286.t8.exon5 8651745 8652162
chr_1 g10286 g10286.t8 exon g10286.t8.exon6 8652319 8652352
chr_1 g10286 g10286.t8 TSS g10286.t8 8652415 8652415

Sequences

>g10286.t8 Gene=g10286 Length=1278
ATGGAAATTGAACCTAAAAAACCTTTCCTAATAGGAGTTGCAGGAGGTACCGCAAGTGGC
AAAAGTTCAGTATGTAAGCGAATTATTGAAAAATTGGGACAAGCTGACATAAATGAACGA
CAACGTCAAGTAGTAAGCATTAGCCAGGATTCCTTTTATCGTGAACTTACAGAAGAAGAG
AAAATTAAGGCGCAAAAGGGGCAGTTTAATTTTGATCATCCTCAATCTTTTGACGAAGAG
TTAATGTACACAACAATGAAGCAAATTTTATCAGGCGAAACAGTTGTATTGCACTCATAT
GATTACAAGACAAACTCTAAATCTACTGAAAAGATTACAATTTATCCAGCTGATGTTGTA
CTTTTTGAAGGAATTTTGGTCTTTTATTTTCCGTCTATTCGCGATCTCTTTCATATGAAG
TTGTTTGTTGATACAGATTCGTAAGTATATGAAAGAGTACCTCGTGACATAAAAGAAAGA
GGAAGAGATCTTGATCAGGTTTTAAATCAGTATATGATGTTTGTTAAGCCAGCTTTTGAA
GAGTTTTGTTCACCAACAAAAAAATATGCTGATGTTATTATCCCACGAGGGGTCGACAAT
TTGGTTGCTATTGACTTGATTGTTCAACATCTTAGAGACTTTTTGAGTGACCGTTTATCT
GCTGATTCCATGACTCTCTCACCAACAACAACACCGGCATTAAATAACAATGCCTCGTCA
TCAGCTACTGCTATGAATGGAGGTTCACGCGGAGATGAACTCCTACAGACGGCATTGAGA
AGACTCTCATCCTCTGTTATCAATCGAAAATTATTTACAATACTCTATGACAGACATATT
TAATGAGAAAAATAGCAATAGACAAAAAAAAACCTTACTAAATATCGCATAAATGATATC
ATTTGCCTATAATAAATTTATAAAATTTCTTCGAATTTAAAAAAAATTTCGTTACTAAAG
AGTTTGATCTCTCTATTTCTTGATTTAAAAATTTATAAAACTATTATTATTTACAATTTG
AGGCATACATAAATCTATTTTTATTATTTGACAAATTTATTATAATGAAGAAAGAATTTA
TAGGTTTTAAAATAATACAATGTAGTTTAATAGTTAAAAAAGATAAGAAAAGAAGTAAAT
AATATTTGTGATGGGTGTATTTTTTTTTTCTCAAAACCTTATTTTGATGATGTAAAAATA
TGTTGACAACTTTATATTAAAAAATGAGATGTAAAATAATAAAGCAAGATGGATATTTTC
TTATCAAAACTGTGTTTT

>g10286.t8 Gene=g10286 Length=108
MFVKPAFEEFCSPTKKYADVIIPRGVDNLVAIDLIVQHLRDFLSDRLSADSMTLSPTTTP
ALNNNASSSATAMNGGSRGDELLQTALRRLSSSVINRKLFTILYDRHI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g10286.t8 Gene3D G3DSA:3.40.50.300 - 1 52 0
1 g10286.t8 PANTHER PTHR10285 URIDINE KINASE 2 46 0
2 g10286.t8 PANTHER PTHR10285:SF66 URIDINE-CYTIDINE KINASE 1 2 46 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0019206 nucleoside kinase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed