General information for g10316.t22
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as DNA polymerase subunit gamma-1, mitochondrial.
Parent gene
- The parent gene g10316 is located on chr_1: 8902361..8902884 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10316 | g10316.t22 | isoform | g10316.t22 | 8899718 | 8900302 |
| chr_1 | g10316 | g10316.t22 | exon | g10316.t22.exon1 | 8899718 | 8900302 |
| chr_1 | g10316 | g10316.t22 | cds | g10316.t22.CDS1 | 8899719 | 8900126 |
| chr_1 | g10316 | g10316.t22 | TSS | g10316.t22 | 8900979 | 8900979 |
| chr_1 | g10316 | g10316.t22 | TTS | g10316.t22 | NA | NA |
Sequences
>g10316.t22 Gene=g10316 Length=585
GTGTGTGGTGTAATATCGAACTCGAAAATTGTTGTTGGTTCTTCAAATTACCACATAAAG
ATGGAAAATCGAAAAATGTTGGTAATCCTCTTGCAAAAGATTTTATTAATAAATTTTCTG
AAAATGTTTTAACTGGTGAGGGACATATTGCTGAGCGAATTATTGAAATTGCACGCATGC
TTTCTTATTGGCGTAACAATCGTGATCGTATAATGGGTCAAATGGTTGTATGGCTTCATA
CACTACCAAAAAATTTATCTTCGAGTGAAATGGAATATGGAGCAATTATACCTCAAGTTG
TAGTTTGTGGTACATTAACACGTCGTGCAATGGAACCAACATGGATGACAGCGAGCAATT
CTAAAATTGAAAGAGTAGGATCAGAGCTTCGTGGCATGGTTCAAGCACCCGAAGGATATA
AGATAGTAGGTGCTGATGTTGATTCACAAGAATTATGGATAGCTTCTTTATTGGGTGATT
CAGAGAGAAAAATTCATGGCTCTACACCATTTGGTTGGATGACTTTAAGTGGAACAAAAT
CAAAAGGAACAGATTTGCATACAATAACAGCAAATGCTGTTGGTA
>g10316.t22 Gene=g10316 Length=136
MLSYWRNNRDRIMGQMVVWLHTLPKNLSSSEMEYGAIIPQVVVCGTLTRRAMEPTWMTAS
NSKIERVGSELRGMVQAPEGYKIVGADVDSQELWIASLLGDSERKIHGSTPFGWMTLSGT
KSKGTDLHTITANAVG
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g10316.t22 | PANTHER | PTHR10267 | DNA POLYMERASE SUBUNIT GAMMA-1 | 1 | 136 | 0 |
| 1 | g10316.t22 | Pfam | PF00476 | DNA polymerase family A | 5 | 135 | 0 |
| 3 | g10316.t22 | SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 11 | 135 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003887 | DNA-directed DNA polymerase activity | MF |
| GO:0003677 | DNA binding | MF |
| GO:0006260 | DNA replication | BP |
| GO:0005760 | gamma DNA polymerase complex | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
