General information for g10317.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Glutamyl-tRNA(Gln) amidotransferase subunit C-1, mitochondrial.
Parent gene
- The parent gene g10317 is located on chr_1: 8902675..8902884 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10317 | g10317.t1 | isoform | g10317.t1 | 8902393 | 8902884 |
| chr_1 | g10317 | g10317.t1 | exon | g10317.t1.exon1 | 8902393 | 8902604 |
| chr_1 | g10317 | g10317.t1 | cds | g10317.t1.CDS1 | 8902393 | 8902604 |
| chr_1 | g10317 | g10317.t1 | exon | g10317.t1.exon2 | 8902671 | 8902884 |
| chr_1 | g10317 | g10317.t1 | cds | g10317.t1.CDS2 | 8902671 | 8902884 |
| chr_1 | g10317 | g10317.t1 | TTS | g10317.t1 | 8902947 | 8902947 |
| chr_1 | g10317 | g10317.t1 | TSS | g10317.t1 | NA | NA |
Sequences
>g10317.t1 Gene=g10317 Length=426
ATGTTCCGAAGAAATATTTTAAATTTATTTATTCAAAGAAGTTATTGCAATATTCATAAT
AAAATATTCAATTGGAAAGAGTTAAAGTATAAAACAAAAGTTCCACAAAATGTAGTTAAG
TCAATATTTGAGGAGAAAACCGAAAAAATTAAAGTTACAGAAGAAGAAATAATACTTTTA
GAAAAACTTAGTTTAGTTGATCTTGAACGAAAGGAAGCAGTTAAAGTTTTAGAAGATTCA
ATAGAATTTGCGAGCAAAATCCATAATATCAAAACAGATCAAAATATTGAACCACTTTAC
ACTGTTTTAGAGAACTATCAGCTCAAGTTGAGAGAAGATAAAGTCACAGATGGCAATATA
AAACAAGATGTAATGAAAAATGCAGTGAAAACTGAAGAAGAGACTTATTTTGTATCTCCG
AAATGA
>g10317.t1 Gene=g10317 Length=141
MFRRNILNLFIQRSYCNIHNKIFNWKELKYKTKVPQNVVKSIFEEKTEKIKVTEEEIILL
EKLSLVDLERKEAVKVLEDSIEFASKIHNIKTDQNIEPLYTVLENYQLKLREDKVTDGNI
KQDVMKNAVKTEEETYFVSPK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10317.t1 | Coils | Coil | Coil | 43 | 63 | - |
| 5 | g10317.t1 | Gene3D | G3DSA:1.10.20.60 | - | 33 | 141 | 1.6E-6 |
| 2 | g10317.t1 | PANTHER | PTHR15004:SF0 | GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT C, MITOCHONDRIAL | 14 | 141 | 1.3E-18 |
| 3 | g10317.t1 | PANTHER | PTHR15004 | UNCHARACTERIZED | 14 | 141 | 1.3E-18 |
| 1 | g10317.t1 | Pfam | PF02686 | Glu-tRNAGln amidotransferase C subunit | 69 | 137 | 5.8E-9 |
| 4 | g10317.t1 | SUPERFAMILY | SSF141000 | Glu-tRNAGln amidotransferase C subunit | 51 | 138 | 6.15E-11 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006450 | regulation of translational fidelity | BP |
KEGG
Orthology
- This transcript has been annotated with K02435 (aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit C)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
