Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10318 g10318.t4 TSS g10318.t4 8903369 8903369
chr_1 g10318 g10318.t4 isoform g10318.t4 8903588 8904342
chr_1 g10318 g10318.t4 exon g10318.t4.exon1 8903588 8904342
chr_1 g10318 g10318.t4 cds g10318.t4.CDS1 8903609 8904340
chr_1 g10318 g10318.t4 TTS g10318.t4 NA NA

Sequences

>g10318.t4 Gene=g10318 Length=755
GCTCTCAATGAGGAAAAACTGATGAATATAATGGATGAAAATTTTCTTAGTCAACTTAGT
TGGGATGAAAATAATCAAGGAGGAGGTGTTAATGTATCGCAATATGAATCAGCAAGTCAA
AATCATAGTGAAGCAAGCAATAGCAGTACTGATGGAATTGCAGCAGATTCTCTTCAAACA
ACTTTTAGTGGAATTAACAAACTAAAATCAGAACCTGTAGTTGTTCAACAAATTGTGAGG
CAACAAACTGCTAAAGTATCACAATATCAACCAATAAAGCCGGCAACAACAACAGGAATC
AAACAAGGTCAAGGTCAAATGCAAAAAATAACACAGCAGCAACCAATATCTCCGCCTGTT
CAACCAATAGCATCATCAGTGATTCTTACTCAAAATCGATCAAATATTATCACTACATCT
CCGTCAGCTATCTTAGTTCAAAATCCGAATTTTTACAATTTAAAGACTATTGCACCATCG
AATAATACGACAACTATTATTCAACCAAAAACTAAGCAACAGAAAACGACAACAATTCAG
CCCGCACCAACAGCTTTGCCTGTTATGCAATTAATTCAAACAACAACGGCCGGAGATAAA
CAACCGGTACTTTTACAAACAAATCCAACCGTCATGTATACAACTACTTCAGCTAATGAT
GTACAAAATATACAACTTGTTAATGCTCCAATTCTTACAACAGTTCCTCTTGTTCTTGAT
AGTGAAAATAAATTCACCATTGGAACAGCTCCGCC

>g10318.t4 Gene=g10318 Length=244
MNIMDENFLSQLSWDENNQGGGVNVSQYESASQNHSEASNSSTDGIAADSLQTTFSGINK
LKSEPVVVQQIVRQQTAKVSQYQPIKPATTTGIKQGQGQMQKITQQQPISPPVQPIASSV
ILTQNRSNIITTSPSAILVQNPNFYNLKTIAPSNNTTTIIQPKTKQQKTTTIQPAPTALP
VMQLIQTTTAGDKQPVLLQTNPTVMYTTTSANDVQNIQLVNAPILTTVPLVLDSENKFTI
GTAP

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed