General information for g10319.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Sodium/potassium-transporting ATPase subunit beta-2.
Parent gene
- The parent gene g10319 is located on chr_1: 8910749..8912127 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10319 | g10319.t9 | isoform | g10319.t9 | 8907293 | 8910749 |
| chr_1 | g10319 | g10319.t9 | exon | g10319.t9.exon1 | 8907293 | 8907966 |
| chr_1 | g10319 | g10319.t9 | cds | g10319.t9.CDS1 | 8907900 | 8907966 |
| chr_1 | g10319 | g10319.t9 | exon | g10319.t9.exon2 | 8908030 | 8908202 |
| chr_1 | g10319 | g10319.t9 | cds | g10319.t9.CDS2 | 8908030 | 8908202 |
| chr_1 | g10319 | g10319.t9 | exon | g10319.t9.exon3 | 8908263 | 8908555 |
| chr_1 | g10319 | g10319.t9 | cds | g10319.t9.CDS3 | 8908263 | 8908555 |
| chr_1 | g10319 | g10319.t9 | exon | g10319.t9.exon4 | 8908987 | 8909106 |
| chr_1 | g10319 | g10319.t9 | cds | g10319.t9.CDS4 | 8908987 | 8909106 |
| chr_1 | g10319 | g10319.t9 | exon | g10319.t9.exon5 | 8909175 | 8909315 |
| chr_1 | g10319 | g10319.t9 | cds | g10319.t9.CDS5 | 8909175 | 8909315 |
| chr_1 | g10319 | g10319.t9 | exon | g10319.t9.exon6 | 8910611 | 8910749 |
| chr_1 | g10319 | g10319.t9 | cds | g10319.t9.CDS6 | 8910611 | 8910749 |
| chr_1 | g10319 | g10319.t9 | TSS | g10319.t9 | 8911142 | 8911142 |
| chr_1 | g10319 | g10319.t9 | TTS | g10319.t9 | NA | NA |
Sequences
>g10319.t9 Gene=g10319 Length=1540
ATGTCTAAAGGAATAACGAATTCTCTCGAAATGGACGAGCCTTTTTATGTTCGTCGTAAG
CCAGATCCTATACCGTTCAGTAAATTTCTTTATAACAGTGATAAAGGAACAGTAATGGGA
AGAAATGGTCAATCATGGGCTAAAATCGGAATTTTCTATACAATCTTTTATGGAGTTTTG
GCTGCACTTGTTGCCGTATGTATGTGGGTATTTTTACAAACATTAGATCCTCGTATACCT
AAATGGCAATTACATGAATCTCTTATTGGAACAAACCCAGGTTTGGGTTTTCGTCCATTG
CCACCAGAGGATAATGTAGAAAGTACATTGATTTGGTATAGAGGAACCAATAAAGAGGAT
TTTAAAGTATGGACAGACGCTTTAGATGAGTTTCTGTTTCCTTATAAAACGCCTGGTTCA
ATTTCGGGTCATGGTCAAAATATTTACAATTGCGATTATGGTCAAGAACCACCAAGAGGA
CAAGTTTGTGACGTTGATATTAAAGCATGGGCACCTTGCGTTCAGGAAAACTTTTATAAT
TATCATCACAGTGCACCCTGTATTTTTCTTAAATTGAACAAAATCTTTGGTTGGATTCCA
GATTATTATAGAGATCCAAATAATTTGCCATCAAATATGCCTAAAGATCTTGTTGATCAT
ATTAATAATACTGCTGTAACTGCTCCACATACATTGAATACAATTTGGGTTTCATGTGAA
GGTGAAAATCCTGCTGATTTAGAAAATATCGGACCTGTCAAGTACTATCCTAGAAGAGGA
TTTCCTGGTTATTATTATCCATACGAAAATTCAGAAGGTTATTTATCACCTCTTGTCGCT
GTGCATTTTGAGCGACCTGTCCGTAAGTGGAATAATTATCAACGTCGAATGCAAAGCATG
GGCAAAGAACATCAAACACGACCGAGCAGATAGAATAGGATCAGTTCATTTTGAGTTGAT
GATTGATTAATTAAAAATACTGCTATATACTATCAAAAAATTGAATCTCTTTTTTCCAAA
GCCTAAAGTTTTAGAAATTCTTGACTCGATGACAATCTCTAAATAATTACTCAAATTAAT
TACGTTTTTCCGAATCTCATTTTAAAAGAGATACATAGAAGAGATGCATGCGTTCACGAT
TTTAATTTTTTTTTTCGCTGAAAAAATCTACATCTGAGATACAAAATTTATTAGGAAGCT
TTTTAGATTGAAAATATGAAAGACAAAAATAAGCAAAAGACAATATGTGAAATGTAATTC
TCAATTTTGAATTTGAAATAATAAAGTCAGAGAAATTAGATTATAAATCTTAAATTAACC
TTTTTATTTTCAGTAAAATATGTACAATGTCATAAGTAATCAATTTATCTATAAATTTTA
CAACATTACAATAATTATAATGCATTAACCTTAATCAATCAATGTTTAATATGCAGCAAG
CAAGTACTTATTAAAACTAAAATATTTAATTCACTACTTTATTAAAATAATTTAGATGAG
ATTAAAAACACATATTAGTTACGAAGGAAATAGATACGAT
>g10319.t9 Gene=g10319 Length=310
MSKGITNSLEMDEPFYVRRKPDPIPFSKFLYNSDKGTVMGRNGQSWAKIGIFYTIFYGVL
AALVAVCMWVFLQTLDPRIPKWQLHESLIGTNPGLGFRPLPPEDNVESTLIWYRGTNKED
FKVWTDALDEFLFPYKTPGSISGHGQNIYNCDYGQEPPRGQVCDVDIKAWAPCVQENFYN
YHHSAPCIFLKLNKIFGWIPDYYRDPNNLPSNMPKDLVDHINNTAVTAPHTLNTIWVSCE
GENPADLENIGPVKYYPRRGFPGYYYPYENSEGYLSPLVAVHFERPVRKWNNYQRRMQSM
GKEHQTRPSR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10319.t9 | Gene3D | G3DSA:2.60.40.1660 | Na | 18 | 293 | 1.4E-88 |
| 2 | g10319.t9 | PANTHER | PTHR11523:SF46 | SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA-2 | 23 | 288 | 1.4E-143 |
| 3 | g10319.t9 | PANTHER | PTHR11523 | SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT | 23 | 288 | 1.4E-143 |
| 1 | g10319.t9 | Pfam | PF00287 | Sodium / potassium ATPase beta chain | 26 | 288 | 6.3E-75 |
| 7 | g10319.t9 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 50 | - |
| 8 | g10319.t9 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 51 | 72 | - |
| 6 | g10319.t9 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 73 | 310 | - |
| 4 | g10319.t9 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 49 | 71 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006813 | potassium ion transport | BP |
| GO:0005890 | sodium:potassium-exchanging ATPase complex | CC |
| GO:0006814 | sodium ion transport | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
