Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1032 g1032.t1 TTS g1032.t1 7691688 7691688
chr_3 g1032 g1032.t1 isoform g1032.t1 7691905 7693071
chr_3 g1032 g1032.t1 exon g1032.t1.exon1 7691905 7693071
chr_3 g1032 g1032.t1 cds g1032.t1.CDS1 7691905 7693071
chr_3 g1032 g1032.t1 TSS g1032.t1 7693264 7693264

Sequences

>g1032.t1 Gene=g1032 Length=1167
ATGTCCATAATAAATGGTACTTGCTTTTACAATCGCCTAATTATTGAATCGAAAACAATT
GGTAGAGAGTCAATAGATACAGTTTGGAAATCAAATTATAATAGAGAATACCAATCAAAT
ATAAAAGACCTCGTATTTCAAAATTGCAATTTTCTTGAATTCCCTAAATTTATATCCAAC
ATTGATCAAAACTTAAATATTTTGGAAATTGTTAGTTGTCAGCTAAAATACTTGAATAAG
GAATGCTTTATTAAGTACACAGAACTCACAGAACTAAACATCATAAATTGTGGATTAAAA
ATATTAAATGGAGATTTACTTGAAAATCTAACAAAAATTGAAAAAGTTTCATTTGCAAAT
AATAAAATTGAAGAAATTGGTCCAGAGCTCCTCGATAATCAAAATAACTTAAAATATGTT
GATTTTCGAAATAATAAAAATATTAATATGATATTTGATGCTGGTAAACAAGAAAGCACT
AACACTTTGGATGAAATCAAAAATGAAATTAAAGAAAAATGTAAACCAAATATGCAAGCA
ATAAAAAGAACTAGATCATCATCAATATCACCAATGTCATCAATAATACAAAATACAATG
CAACAAAATATGCCATATAATTTACAAAAGATTTTTGATGATCCAGCTTACAAAGACTTC
ACTATAAATATCAGTGAATCATCTTTTAAAGTCCATAAAATTCTGTTCGCTGCTCGCAGT
CCAACATTGGCTGAAATTTTCAAAAACAATCCAGAAGCACAAGAGCTGAATCTTCGTGAT
ATTCCAGAAGAAACATTCAAAGCAATTCATGATTTTATTTACAACAATCATTTGCCAAAT
GATGTCAATTTCATAGAAGTTTACGCTGCTGCTGCTCGTTTGAAAATTGATGATTTAATG
GACACAATTGTTGCTCATTTATTGACTAATGTTGATAAGAAAAATGCAATTGATGCTTTA
ACTTTGAGCAATAAATTTAACATTGATGAGCTGCGTACAAAATCATTTGAAGCAATACAA
AGTAAAATTTTTCCTGAGCGCAAATTGGATGAAAAATTAGCAAGAGAGCCTGAGAAATTG
AAAGAAATTATTGCGGCCAAAAATATGCTGGAACAAAAGTTTGCTGAAATGATGTTAAAA
GATGAAGCTAGTGGTGGACAAAATTGA

>g1032.t1 Gene=g1032 Length=388
MSIINGTCFYNRLIIESKTIGRESIDTVWKSNYNREYQSNIKDLVFQNCNFLEFPKFISN
IDQNLNILEIVSCQLKYLNKECFIKYTELTELNIINCGLKILNGDLLENLTKIEKVSFAN
NKIEEIGPELLDNQNNLKYVDFRNNKNINMIFDAGKQESTNTLDEIKNEIKEKCKPNMQA
IKRTRSSSISPMSSIIQNTMQQNMPYNLQKIFDDPAYKDFTINISESSFKVHKILFAARS
PTLAEIFKNNPEAQELNLRDIPEETFKAIHDFIYNNHLPNDVNFIEVYAAAARLKIDDLM
DTIVAHLLTNVDKKNAIDALTLSNKFNIDELRTKSFEAIQSKIFPERKLDEKLAREPEKL
KEIIAAKNMLEQKFAEMMLKDEASGGQN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g1032.t1 CDD cd18186 BTB_POZ_ZBTB_KLHL-like 219 294 0.000
6 g1032.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 17 209 0.000
7 g1032.t1 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 210 344 0.000
2 g1032.t1 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 140 371 0.000
1 g1032.t1 Pfam PF00651 BTB/POZ domain 209 308 0.000
8 g1032.t1 ProSiteProfiles PS50097 BTB domain profile. 218 282 13.343
5 g1032.t1 SMART SM00225 BTB_4 218 311 0.000
3 g1032.t1 SUPERFAMILY SSF52058 L domain-like 39 151 0.000
4 g1032.t1 SUPERFAMILY SSF54695 POZ domain 194 309 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values