General information for g10323.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Organic solute transporter alpha-like protein.
Parent gene
- The parent gene g10323 is located on chr_1: 8918704..8919651 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10323 | g10323.t1 | isoform | g10323.t1 | 8918704 | 8919651 |
| chr_1 | g10323 | g10323.t1 | exon | g10323.t1.exon1 | 8918704 | 8919265 |
| chr_1 | g10323 | g10323.t1 | cds | g10323.t1.CDS1 | 8918704 | 8919265 |
| chr_1 | g10323 | g10323.t1 | exon | g10323.t1.exon2 | 8919320 | 8919651 |
| chr_1 | g10323 | g10323.t1 | cds | g10323.t1.CDS2 | 8919320 | 8919651 |
| chr_1 | g10323 | g10323.t1 | TSS | g10323.t1 | 8920545 | 8920545 |
| chr_1 | g10323 | g10323.t1 | TTS | g10323.t1 | NA | NA |
Sequences
>g10323.t1 Gene=g10323 Length=894
ATGAATTACATTGCAGAATTGGATTGCATCAATGGACTTCCATCAGTTTCAGTTTTCTGG
AATTTTTTGCTTGCTGAAAAAATAAGGATTTTATTAATCTTCTTTATTCCTATATTATTA
AGTTTGTTGACTTTATGGATTTATTCTATAAATTTAAAGAACGTTATGAAGAATTGTCCA
ATCAACATTCGAATCAACTGCATTTCGCTTGTTTCAATATACCCATTTGTAAGCATTTTT
AGTATGATAGCAATTTCTGTGCCAAGAACATATTTCTTTAATGATTCTGTTGGTCATATT
GCATTTATGGTCATAAGTTGGCAATTCTATCGTTTGTGTATGATTTATGTAGATGGTGAA
TCAAGTTTTATAGAAATTGCAAACGATACATCGTTTACTCTTAAAGCACCACCATTTTGT
TGCTGTCTACCTCTGAAACGTTCATCTATCTCAAAGAAGAATTTTATATTTATGAAATTT
TTAATCATTCAGATGCCTTTTACACACATTGCAATGTTTCTTGTGCTCAATATAATCTAC
ATTGAAGACATTCAGGCATTTGATAATTTAATTCTTTATTTTATTCCATTTATAGCAATA
ACAGTTTTTAGTGGAATGTGGGGTTATAATTTAGTTGTAAGAACTTTATCTCCTTATTAT
TCAAGTCTCAAGTTAATTCAAAAATATTTTGCATTTCAACTCGTACTTTTCTATTGTAAA
ATTCTTCCAATTATATTAAATTTTATCATGAAAAAAATTATAACGACTTGTGAAGATCCT
GCATTCACGATTTTAGTTAAAAGACATACAGTGATTCAAATACATGTACAAATACAAATG
TTTATCTTAAGTGTATGGGCTATGAATTTGTATAAAAATCCTATGGGTAATTAA
>g10323.t1 Gene=g10323 Length=297
MNYIAELDCINGLPSVSVFWNFLLAEKIRILLIFFIPILLSLLTLWIYSINLKNVMKNCP
INIRINCISLVSIYPFVSIFSMIAISVPRTYFFNDSVGHIAFMVISWQFYRLCMIYVDGE
SSFIEIANDTSFTLKAPPFCCCLPLKRSSISKKNFIFMKFLIIQMPFTHIAMFLVLNIIY
IEDIQAFDNLILYFIPFIAITVFSGMWGYNLVVRTLSPYYSSLKLIQKYFAFQLVLFYCK
ILPIILNFIMKKIITTCEDPAFTILVKRHTVIQIHVQIQMFILSVWAMNLYKNPMGN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g10323.t1 | PANTHER | PTHR23423:SF21 | ORGANIC SOLUTE TRANSPORTER ALPHA-LIKE PROTEIN | 26 | 294 | 7.1E-32 |
| 3 | g10323.t1 | PANTHER | PTHR23423 | ORGANIC SOLUTE TRANSPORTER-RELATED | 26 | 294 | 7.1E-32 |
| 1 | g10323.t1 | Pfam | PF03619 | Organic solute transporter Ostalpha | 35 | 291 | 2.3E-15 |
| 14 | g10323.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 27 | - |
| 22 | g10323.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 28 | 51 | - |
| 12 | g10323.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 52 | 62 | - |
| 24 | g10323.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 63 | 85 | - |
| 15 | g10323.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 86 | 96 | - |
| 20 | g10323.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 97 | 117 | - |
| 10 | g10323.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 118 | 155 | - |
| 23 | g10323.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 156 | 179 | - |
| 16 | g10323.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 180 | 190 | - |
| 18 | g10323.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 191 | 209 | - |
| 11 | g10323.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 210 | 229 | - |
| 21 | g10323.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 230 | 250 | - |
| 17 | g10323.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 251 | 269 | - |
| 19 | g10323.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 270 | 291 | - |
| 13 | g10323.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 292 | 297 | - |
| 9 | g10323.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 30 | 52 | - |
| 4 | g10323.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 65 | 87 | - |
| 7 | g10323.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 155 | 177 | - |
| 5 | g10323.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 190 | 209 | - |
| 8 | g10323.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 229 | 250 | - |
| 6 | g10323.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 271 | 290 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
