General information for g10325.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10325 is located on chr_1: 8920821..8922118 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10325 | g10325.t1 | TSS | g10325.t1 | 8920571 | 8920571 |
| chr_1 | g10325 | g10325.t1 | isoform | g10325.t1 | 8920680 | 8922118 |
| chr_1 | g10325 | g10325.t1 | exon | g10325.t1.exon1 | 8920680 | 8920746 |
| chr_1 | g10325 | g10325.t1 | cds | g10325.t1.CDS1 | 8920680 | 8920746 |
| chr_1 | g10325 | g10325.t1 | exon | g10325.t1.exon2 | 8920821 | 8922118 |
| chr_1 | g10325 | g10325.t1 | cds | g10325.t1.CDS2 | 8920821 | 8922118 |
| chr_1 | g10325 | g10325.t1 | TTS | g10325.t1 | 8922282 | 8922282 |
Sequences
>g10325.t1 Gene=g10325 Length=1365
ATGATTAACTTAAGCAAACAGAATATAGTAAATGCAGAGCAAGCACCACCTTTAAACTTT
GAAATTGAAATTGAGACTAAGCAAAATAATGGCAACAAAGAAAAATATTTGTGTAAGCTA
TGCTGTATGAATAAACAGCGATTCTTTTGCAAAAAGTGTCTTAATTTAGGTTTATTTTCA
TTCGTCAATTCTGAAGAGAGATTTATTGATAAACAGCAAAAACTCAATAATGTAATAAAC
TCACAAAAGACATTAAGTTTGGAATTTACGGAAAAATTTAAGACATTTACCAAACTTGAG
AACTTGCGATTATCGTTGACAAAGTATCGTAAAAATAATGCATTATTAAGAGAACTGTTG
AGAGAAAAGAAAGAGAATATTCAAAAATTACAAGAGATAAAAAAGGAAAATCATGATAAG
AATAAATCAATGAGAATAATTTTACCTAAATATGAAGACAAAGTCAATAAATTAGGTGAA
TATGTGCTTATAGCTATAGAGAAAAATGACGATCTGCGTAAAAAGAGCAACGAACAAAAT
GAGAAATTAAAAGCTTTACGTCGTAATAACATTGACAAGTTAATAAAATATATATTTCCA
ATTAATGAAAAGGAAAGTATTATATATCAAAGTGATTCAGAATCAATGGCAAGTGAAACA
TCATCACGCAATGAAAATTCTTTAAAAGAATACGTTATCTCAAATGGTCCCAGTATATCA
AATCAAAATTTTTATTTCGATTATTGTAAGTGGTTAGCAAAAAATAAAGACAGCTCAAAT
ACGGGAAATAATAATAATGAGAGCGGAATGGAAATAATGACACATAAAGCATACTCAACT
ATTGCGGCTTTAACCTACATTGTTCAATTAATAAATGCTTTAAGTTTCTATTTAGACGTT
CGTCTTCATTATAAAATGACTTGCAATGATTTCTGCAAAGTACTTCTCAATGAGAACCAA
TTTAAAAGAAAGGTGTCAAAGTTGAATTATAATATTGCACAATTTCTTTATATTCAACGT
AAACCATGTGCACAATCTTCTTCAATGATAATGGAAAACGTTTTACGATTAGTGCATGAT
GAAAAAGATGATAATTTGGCAACAACTGAAGGAATTGGAGTGGATTCTACAGTAAGCCTT
TCTTTTACTGATCTTAATGATGAGAATATAAGTGATGATGATTCGGATGTTGATGATGAT
GATGCTCATAATAAAGAAGATTGGGAAAATGTATCAAACATTCCATCAATTGAAGTTGCT
CATCATTCTATGGCTATGCCTCATGACAGTGCAATGTCTTCAACAATCATGAATAATATT
ACTAATGTTGCTAACTCTCTATTTTGGAATCGCTGGAACAAGTAG
>g10325.t1 Gene=g10325 Length=454
MINLSKQNIVNAEQAPPLNFEIEIETKQNNGNKEKYLCKLCCMNKQRFFCKKCLNLGLFS
FVNSEERFIDKQQKLNNVINSQKTLSLEFTEKFKTFTKLENLRLSLTKYRKNNALLRELL
REKKENIQKLQEIKKENHDKNKSMRIILPKYEDKVNKLGEYVLIAIEKNDDLRKKSNEQN
EKLKALRRNNIDKLIKYIFPINEKESIIYQSDSESMASETSSRNENSLKEYVISNGPSIS
NQNFYFDYCKWLAKNKDSSNTGNNNNESGMEIMTHKAYSTIAALTYIVQLINALSFYLDV
RLHYKMTCNDFCKVLLNENQFKRKVSKLNYNIAQFLYIQRKPCAQSSSMIMENVLRLVHD
EKDDNLATTEGIGVDSTVSLSFTDLNDENISDDDSDVDDDDAHNKEDWENVSNIPSIEVA
HHSMAMPHDSAMSSTIMNNITNVANSLFWNRWNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10325.t1 | Coils | Coil | Coil | 99 | 140 | - |
| 4 | g10325.t1 | Coils | Coil | Coil | 169 | 189 | - |
| 2 | g10325.t1 | PANTHER | PTHR13664 | BECLIN 1-ASSOCIATED AUTOPHAGY-RELATED KEY REGULATOR | 21 | 447 | 3.3E-51 |
| 1 | g10325.t1 | Pfam | PF10186 | Vacuolar sorting 38 and autophagy-related subunit 14 | 38 | 337 | 3.2E-25 |
| 6 | g10325.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 276 | - |
| 7 | g10325.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 277 | 298 | - |
| 5 | g10325.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 299 | 454 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K17889 (beclin 1-associated autophagy-related key regulator)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
