General information for g10325.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10325 is located on chr_1: 8920821..8922118 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10325 | g10325.t3 | isoform | g10325.t3 | 8920821 | 8922118 |
| chr_1 | g10325 | g10325.t3 | exon | g10325.t3.exon1 | 8920821 | 8922118 |
| chr_1 | g10325 | g10325.t3 | TSS | g10325.t3 | 8920863 | 8920863 |
| chr_1 | g10325 | g10325.t3 | cds | g10325.t3.CDS1 | 8920880 | 8922118 |
| chr_1 | g10325 | g10325.t3 | TTS | g10325.t3 | 8922282 | 8922282 |
Sequences
>g10325.t3 Gene=g10325 Length=1298
AAATTGAGACTAAGCAAAATAATGGCAACAAAGAAAAATATTTGTGTAAGCTATGCTGTA
TGAATAAACAGCGATTCTTTTGCAAAAAGTGTCTTAATTTAGGTTTATTTTCATTCGTCA
ATTCTGAAGAGAGATTTATTGATAAACAGCAAAAACTCAATAATGTAATAAACTCACAAA
AGACATTAAGTTTGGAATTTACGGAAAAATTTAAGACATTTACCAAACTTGAGAACTTGC
GATTATCGTTGACAAAGTATCGTAAAAATAATGCATTATTAAGAGAACTGTTGAGAGAAA
AGAAAGAGAATATTCAAAAATTACAAGAGATAAAAAAGGAAAATCATGATAAGAATAAAT
CAATGAGAATAATTTTACCTAAATATGAAGACAAAGTCAATAAATTAGGTGAATATGTGC
TTATAGCTATAGAGAAAAATGACGATCTGCGTAAAAAGAGCAACGAACAAAATGAGAAAT
TAAAAGCTTTACGTCGTAATAACATTGACAAGTTAATAAAATATATATTTCCAATTAATG
AAAAGGAAAGTATTATATATCAAAGTGATTCAGAATCAATGGCAAGTGAAACATCATCAC
GCAATGAAAATTCTTTAAAAGAATACGTTATCTCAAATGGTCCCAGTATATCAAATCAAA
ATTTTTATTTCGATTATTGTAAGTGGTTAGCAAAAAATAAAGACAGCTCAAATACGGGAA
ATAATAATAATGAGAGCGGAATGGAAATAATGACACATAAAGCATACTCAACTATTGCGG
CTTTAACCTACATTGTTCAATTAATAAATGCTTTAAGTTTCTATTTAGACGTTCGTCTTC
ATTATAAAATGACTTGCAATGATTTCTGCAAAGTACTTCTCAATGAGAACCAATTTAAAA
GAAAGGTGTCAAAGTTGAATTATAATATTGCACAATTTCTTTATATTCAACGTAAACCAT
GTGCACAATCTTCTTCAATGATAATGGAAAACGTTTTACGATTAGTGCATGATGAAAAAG
ATGATAATTTGGCAACAACTGAAGGAATTGGAGTGGATTCTACAGTAAGCCTTTCTTTTA
CTGATCTTAATGATGAGAATATAAGTGATGATGATTCGGATGTTGATGATGATGATGCTC
ATAATAAAGAAGATTGGGAAAATGTATCAAACATTCCATCAATTGAAGTTGCTCATCATT
CTATGGCTATGCCTCATGACAGTGCAATGTCTTCAACAATCATGAATAATATTACTAATG
TTGCTAACTCTCTATTTTGGAATCGCTGGAACAAGTAG
>g10325.t3 Gene=g10325 Length=412
MNKQRFFCKKCLNLGLFSFVNSEERFIDKQQKLNNVINSQKTLSLEFTEKFKTFTKLENL
RLSLTKYRKNNALLRELLREKKENIQKLQEIKKENHDKNKSMRIILPKYEDKVNKLGEYV
LIAIEKNDDLRKKSNEQNEKLKALRRNNIDKLIKYIFPINEKESIIYQSDSESMASETSS
RNENSLKEYVISNGPSISNQNFYFDYCKWLAKNKDSSNTGNNNNESGMEIMTHKAYSTIA
ALTYIVQLINALSFYLDVRLHYKMTCNDFCKVLLNENQFKRKVSKLNYNIAQFLYIQRKP
CAQSSSMIMENVLRLVHDEKDDNLATTEGIGVDSTVSLSFTDLNDENISDDDSDVDDDDA
HNKEDWENVSNIPSIEVAHHSMAMPHDSAMSSTIMNNITNVANSLFWNRWNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10325.t3 | Coils | Coil | Coil | 57 | 98 | - |
| 3 | g10325.t3 | Coils | Coil | Coil | 127 | 147 | - |
| 2 | g10325.t3 | PANTHER | PTHR13664 | BECLIN 1-ASSOCIATED AUTOPHAGY-RELATED KEY REGULATOR | 3 | 405 | 8.7E-48 |
| 1 | g10325.t3 | Pfam | PF10186 | Vacuolar sorting 38 and autophagy-related subunit 14 | 3 | 295 | 4.0E-23 |
| 5 | g10325.t3 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 234 | - |
| 7 | g10325.t3 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 235 | 256 | - |
| 6 | g10325.t3 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 257 | 412 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
