General information for g10327.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative DNA repair protein Rev1.
Parent gene
- The parent gene g10327 is located on chr_1: 8924430..8925718 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10327 | g10327.t6 | TSS | g10327.t6 | 8921444 | 8921444 |
| chr_1 | g10327 | g10327.t6 | isoform | g10327.t6 | 8922274 | 8923615 |
| chr_1 | g10327 | g10327.t6 | exon | g10327.t6.exon1 | 8922274 | 8922812 |
| chr_1 | g10327 | g10327.t6 | exon | g10327.t6.exon2 | 8922879 | 8923311 |
| chr_1 | g10327 | g10327.t6 | cds | g10327.t6.CDS1 | 8923179 | 8923311 |
| chr_1 | g10327 | g10327.t6 | exon | g10327.t6.exon3 | 8923374 | 8923615 |
| chr_1 | g10327 | g10327.t6 | cds | g10327.t6.CDS2 | 8923374 | 8923615 |
| chr_1 | g10327 | g10327.t6 | TTS | g10327.t6 | 8923739 | 8923739 |
Sequences
>g10327.t6 Gene=g10327 Length=1214
TTATTTCTCTAAAGAATTTTTTTTAATCTCATCAACTTGTTCTTGATTAACTAAAATAGT
TTTGCTTTCAAAAATTGTGCTGAAGCTTGCAATTAATTCTGGAATAACATCATTTATTTG
AATGTCTCTTTTGCATTCTTTAGAAAGAGATGTAACTTCTTTGTCTTCGATTCCACAAGG
TACAATATGATTGAACCAACTTAAATCAGTGTTACAATTCAATGCAAGTCCATGCATTGT
CACATATCGACTAACATGAATGCCAATAGCACAAATCTTTCTATCATTAATCCATACACC
CGTATCAGTTGTAGTGGTTGCGTTTAATTCATATTTATGGCATAAATTTATTATCGTTCT
TTCAATACTATTCACGTACCAACGAACACCTTGCTTGAAATTTTTTAAATTGATAATTGG
ATATGCAACAAGCTGTCCAGGTCCATGAAATGTAATAAGACCTCCTCTATTTGTCTTGAT
AAACTCTGCACCTAAGTTTCTCAACTTATTTTCATCTTCTATAGTATAATTTTTAGTCCA
CAAACCTATTGTATAAACTGGATAATGTTCAGTTAAAATTAAAACATTTTTATAATTCCA
AGTATTTTGAATTATTTGTGTTGAGATAAATTTTTGAAGATTAAGAGATTCTAAATATGG
CAATTTACCCACATTAAAAATGTGAATAAGTTTTGTTGAATTCATAATTTTTAGAAAAAT
GATAATCAGCTGATTTTATATTCTTTTTTAAAAGTTGATTTTCCCCCAAACAGTAACGCG
CGTTTTGTTTGAAAATAAAGTTTTATTGTGAAATTAATTTGTAAAATACTACATTTAAAA
TGAAAAGAAGGCCAGTTGATGAAGATAATGGATTTGCAGAGCATGGTGGTTATATGTCAG
CAAAAATCAATAAACTTGAAGAGCAATTTTCAATTTTACAAAAAGATATCAAAAAATCTA
ATTTATTTGAAGGTGTATCAATATTTGTAAATGGTAGAACAAATCCATCAGCAGATGAAT
TAAAACGTGTAATGATGGAACATGGCGGTATTTTTCATCATTACCAAAGAAGTTTTACAA
GATTTGTAATTGCTAGTAATCTTGCTGATGTAAAAATAAGATCAAATATCACGAAGAATA
TAATAAGACCTGAATATATAACAGATTGCTTGAAAGCAAACAAATTACTTGATTATTCAA
ATTACTTGTTACAC
>g10327.t6 Gene=g10327 Length=125
MKRRPVDEDNGFAEHGGYMSAKINKLEEQFSILQKDIKKSNLFEGVSIFVNGRTNPSADE
LKRVMMEHGGIFHHYQRSFTRFVIASNLADVKIRSNITKNIIRPEYITDCLKANKLLDYS
NYLLH
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10327.t6 | CDD | cd17719 | BRCT_Rev1 | 42 | 124 | 0.000e+00 |
| 5 | g10327.t6 | Gene3D | G3DSA:3.40.50.10190 | - | 31 | 125 | 0.000e+00 |
| 2 | g10327.t6 | PANTHER | PTHR45990 | DNA REPAIR PROTEIN REV1 | 7 | 124 | 0.000e+00 |
| 1 | g10327.t6 | Pfam | PF16589 | BRCT domain, a BRCA1 C-terminus domain | 39 | 123 | 0.000e+00 |
| 6 | g10327.t6 | ProSiteProfiles | PS50172 | BRCT domain profile. | 38 | 124 | 1.754e+01 |
| 4 | g10327.t6 | SMART | SM00292 | BRCT_7 | 40 | 114 | 5.400e-06 |
| 3 | g10327.t6 | SUPERFAMILY | SSF52113 | BRCT domain | 33 | 125 | 0.000e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
