Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g1033 g1033.t1 isoform g1033.t1 7693519 7694055
chr_3 g1033 g1033.t1 exon g1033.t1.exon1 7693519 7694055
chr_3 g1033 g1033.t1 cds g1033.t1.CDS1 7693519 7694055
chr_3 g1033 g1033.t1 TSS g1033.t1 NA NA
chr_3 g1033 g1033.t1 TTS g1033.t1 NA NA

Sequences

>g1033.t1 Gene=g1033 Length=537
ATGTCTGTGTTGATTGCTAAAATATTTTCTGACTGCATTTTTATTGAATCACAGATAGTT
GCTAATAAATCAGTAAATATCAAGTGGAGACTACAAGATTCAAATTCAAGTAGTTTTGTA
TCGCCTAGAAAAATAATATTTCGAAATTGCACATTTTTTGAGTTTCCTCAAGTCATGAAA
GGATGCAATATTAATAGCTTAAAAACTCTTGAAATTGTCAGTTGTCAGTTCAAAGAATTT
GAAAAAGTAAATTTTAAATATTTCTTCTTCAAAGAACTCTACATCATTGATTGTGAATTG
GAAACATTAAATGGTGATTTTTTCAAAAACATGAGACATGTTGTTAAAATTTCATTTGCT
GGCAATAAACTCAAACAAATTGGTCCAGAACTTCTTGATGGTCTTAATCAACTTGATTGG
GTTGATTTTAGGTACAATAGTAAGATTAACATGCTATTTGATGCTCAAAATCGAAATAAT
TCCAACACCTTGAATGAAATTAAGGCATGCCTTAAAAGTATTAATAGCAAGCATTAA

>g1033.t1 Gene=g1033 Length=178
MSVLIAKIFSDCIFIESQIVANKSVNIKWRLQDSNSSSFVSPRKIIFRNCTFFEFPQVMK
GCNINSLKTLEIVSCQFKEFEKVNFKYFFFKELYIIDCELETLNGDFFKNMRHVVKISFA
GNKLKQIGPELLDGLNQLDWVDFRYNSKINMLFDAQNRNNSNTLNEIKACLKSINSKH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
3 g1033.t1 Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 10 177 0e+00
1 g1033.t1 Pfam PF13855 Leucine rich repeat 91 146 2e-07
2 g1033.t1 SUPERFAMILY SSF52058 L domain-like 34 155 0e+00

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed