General information for g10334.t23
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein disulfide-isomerase A3.
Parent gene
- The parent gene g10334 is located on chr_1: 8934649..8935590 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10334 | g10334.t23 | TTS | g10334.t23 | 8933125 | 8933125 |
| chr_1 | g10334 | g10334.t23 | isoform | g10334.t23 | 8933413 | 8935590 |
| chr_1 | g10334 | g10334.t23 | exon | g10334.t23.exon1 | 8933413 | 8933710 |
| chr_1 | g10334 | g10334.t23 | exon | g10334.t23.exon2 | 8933766 | 8934407 |
| chr_1 | g10334 | g10334.t23 | cds | g10334.t23.CDS1 | 8933996 | 8934407 |
| chr_1 | g10334 | g10334.t23 | exon | g10334.t23.exon3 | 8934468 | 8934696 |
| chr_1 | g10334 | g10334.t23 | cds | g10334.t23.CDS2 | 8934468 | 8934696 |
| chr_1 | g10334 | g10334.t23 | exon | g10334.t23.exon4 | 8934759 | 8934836 |
| chr_1 | g10334 | g10334.t23 | cds | g10334.t23.CDS3 | 8934759 | 8934836 |
| chr_1 | g10334 | g10334.t23 | exon | g10334.t23.exon5 | 8934917 | 8934967 |
| chr_1 | g10334 | g10334.t23 | cds | g10334.t23.CDS4 | 8934917 | 8934967 |
| chr_1 | g10334 | g10334.t23 | exon | g10334.t23.exon6 | 8935028 | 8935108 |
| chr_1 | g10334 | g10334.t23 | cds | g10334.t23.CDS5 | 8935028 | 8935055 |
| chr_1 | g10334 | g10334.t23 | exon | g10334.t23.exon7 | 8935459 | 8935590 |
| chr_1 | g10334 | g10334.t23 | TSS | g10334.t23 | 8935652 | 8935652 |
Sequences
>g10334.t23 Gene=g10334 Length=1511
ATGAAATTACTTGTTTTTCTGTCATTTTTGTTTGTTGCTGAGTTGGCTCTCTCGGCTGAG
AGTGATGTTCTTGAATTGACTGATTCTGATTTTGAAACTACAATCAAAGAATATCCAACA
GTGTTGGCAATGTTTTCCACGTATACGTATAGCTTAAACCAGAATATGCCAAAGCAGCAG
AATTGATGAGAACTGATGATCCTCCAATTACTCTTGTCAAAGTTGATTGTACAGAAGGCG
GCAAGGATACTTGCAGCAAATTCGGTGTTTCTGGATATCCCACTCTCAAAATTTTCAGAA
ACGGTGAAAATCCTCAGGATTATAATGGTCCACGTGAAGCAAGTGGTATTGTGAAATATA
TGAGAGCACAAGTTGGTCCATCATCAAAGGATCTTCTAACAGTTGAAGCATATGAAAAGT
TCTTGGGTGTTCAAGAGGGTGCCGTAGTTGGATTCTTTGAAAAAGAAACGGATTTGAAGA
CTGTTTTCTTAAAATATGCCGATTTGCAACGTGAGAAACTTCGCTTTGCACATTCAAGTG
ATCCAGAAATTCTCAAGAAAGTTGGCGAAACAAACGCTATTCTTCTTTATCGTGCACCAC
AATTGAGTAATAAGTTTGAACCATCTTTTGTTAAATTCACTGGAAAAGATTCAAGTGATC
TTAAAGAATTTGTTAAGAAGAACTTCCACGGTTTAGTTGGTGTACGTAGTCGTGATACTA
TTACTGATTTCAACAATCCATTGGTAACTGCATATTATGCTGTTGATTATATTAAAAATG
CAAAAGGCACAAACTACTGGCGCAATCGTGTACTTAAAGTTGCCAAAGAATGGGAAGGTA
AAATCAATTTTGCTATTGCTGCTAAAGATGAATTCCAACATGAATTGAATGAATATGGTT
ACGATTATGTCGGTGATAAACCAATAATTTTGGCTCGTGACGCTCAAAATCAAAAGTTCA
TCATGAAAGATGAGTTTTCGTAAGTTTTTTTTTCAATAGTTATACACACGTATCTGATAT
CTTCTTTTTCTTATAGTGTTGACAATCTTCAAGCATTTGTCAATGATCTTTATGAAGGCA
ATCTGGAGCCTTACGTTAAATCAGAAGCAATTCCAGTCGATCAAGATGGCCCAGTTACAG
TTGTAGTTGCAAAGAACTTTAATGAGGCTGTTCCAAAAGATAAGGATGTTTTAATCGAAT
TCTACGCACCATGGTGTGGTCATTGCAAAAAATTAGCTCCAACATTCGATGAATTAGGAA
CAAAATTGAAGGGTGAAGATGTTGTTATTGCCAAAATGGATGCTACTGCAAACGATGTTC
CTCCTCAATTTGATGTTCGCGGATTCCCGACACTCTTCTGGTTGCCTAAGGGCGCTCATG
ATAAACCAGTTAGATACGATGGCGGTCGTGAATTGAACGATTTTATCAGCTACATCAGTA
AACACGCTACAAATGAATTAAAAGGATACGATCGCTCTGGAAACGAAAAGAAACAAAAGA
CAGAATTGTAA
>g10334.t23 Gene=g10334 Length=265
MRTDDPPITLVKVDCTEGGKDTCSKFGVSGYPTLKIFRNGENPQDYNGPREASGIVKYMR
AQVGPSSKDLLTVEAYEKFLGVQEGAVVGFFEKETDLKTVFLKYADLQREKLRFAHSSDP
EILKKVGETNAILLYRAPQLSNKFEPSFVKFTGKDSSDLKEFVKKNFHGLVGVRSRDTIT
DFNNPLVTAYYAVDYIKNAKGTNYWRNRVLKVAKEWEGKINFAIAAKDEFQHELNEYGYD
YVGDKPIILARDAQNQKFIMKDEFS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10334.t23 | CDD | cd02961 | PDI_a_family | 4 | 59 | 0.00e+00 |
| 11 | g10334.t23 | CDD | cd03073 | PDI_b’_ERp72_ERp57 | 171 | 265 | 0.00e+00 |
| 10 | g10334.t23 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 1 | 63 | 0.00e+00 |
| 9 | g10334.t23 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 64 | 173 | 0.00e+00 |
| 8 | g10334.t23 | Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 175 | 265 | 0.00e+00 |
| 3 | g10334.t23 | PANTHER | PTHR18929:SF60 | PROTEIN DISULFIDE-ISOMERASE | 8 | 265 | 0.00e+00 |
| 4 | g10334.t23 | PANTHER | PTHR18929 | PROTEIN DISULFIDE ISOMERASE | 8 | 265 | 0.00e+00 |
| 2 | g10334.t23 | Pfam | PF00085 | Thioredoxin | 7 | 60 | 0.00e+00 |
| 1 | g10334.t23 | Pfam | PF13848 | Thioredoxin-like domain | 92 | 265 | 0.00e+00 |
| 7 | g10334.t23 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 4 | 64 | 0.00e+00 |
| 6 | g10334.t23 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 68 | 167 | 0.00e+00 |
| 5 | g10334.t23 | SUPERFAMILY | SSF52833 | Thioredoxin-like | 169 | 260 | 2.75e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
