Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein disulfide-isomerase A3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10334 g10334.t30 TTS g10334.t30 8933125 8933125
chr_1 g10334 g10334.t30 isoform g10334.t30 8933413 8935590
chr_1 g10334 g10334.t30 exon g10334.t30.exon1 8933413 8933710
chr_1 g10334 g10334.t30 cds g10334.t30.CDS1 8933413 8933710
chr_1 g10334 g10334.t30 exon g10334.t30.exon2 8933766 8933942
chr_1 g10334 g10334.t30 cds g10334.t30.CDS2 8933766 8933942
chr_1 g10334 g10334.t30 exon g10334.t30.exon3 8934000 8934407
chr_1 g10334 g10334.t30 cds g10334.t30.CDS3 8934000 8934407
chr_1 g10334 g10334.t30 exon g10334.t30.exon4 8934468 8934696
chr_1 g10334 g10334.t30 cds g10334.t30.CDS4 8934468 8934696
chr_1 g10334 g10334.t30 exon g10334.t30.exon5 8934768 8934836
chr_1 g10334 g10334.t30 cds g10334.t30.CDS5 8934768 8934836
chr_1 g10334 g10334.t30 exon g10334.t30.exon6 8934917 8934967
chr_1 g10334 g10334.t30 cds g10334.t30.CDS6 8934917 8934967
chr_1 g10334 g10334.t30 exon g10334.t30.exon7 8935028 8935106
chr_1 g10334 g10334.t30 cds g10334.t30.CDS7 8935028 8935055
chr_1 g10334 g10334.t30 exon g10334.t30.exon8 8935459 8935590
chr_1 g10334 g10334.t30 TSS g10334.t30 8935652 8935652

Sequences

>g10334.t30 Gene=g10334 Length=1443
ATGAAATTACTTGTTTTTCTGTCATTTTTGTTTGTTGCTGAGTTGGCTCTCTCGGCTGAG
AGTGATGTTCTTGAATTGACTGATTCTGATTTTGAAACTACAATCAAAGAATATCCAACA
GTGTTGGCAATGTTCCACGTATACGTATAGCTTAAACCAGAATATGCCAAAGCAGCAGAA
TTGATGAGAACTGATGATCCTCCAATTACTCTTGTCAAAGTTGATTGTACAGAAGGCGGC
AAGGATACTTGCAGCAAATTCGGTGTTTCTGGATATCCCACTCTCAAAATTTTCAGAAAC
GGTGAAAATCCTCAGGATTATAATGGTCCACGTGGTATTGTGAAATATATGAGAGCACAA
GTTGGTCCATCATCAAAGGATCTTCTAACAGTTGAAGCATATGAAAAGTTCTTGGGTGTT
CAAGAGGGTGCCGTAGTTGGATTCTTTGAAAAAGAAACGGATTTGAAGACTGTTTTCTTA
AAATATGCCGATTTGCAACGTGAGAAACTTCGCTTTGCACATTCAAGTGATCCAGAAATT
CTCAAGAAAGTTGGCGAAACAAACGCTATTCTTCTTTATCGTGCACCACAATTGAGTAAT
AAGTTTGAACCATCTTTTGTTAAATTCACTGGAAAAGATTCAAGTGATCTTAAAGAATTT
GTTAAGAAGAACTTCCACGGTTTAGTTGGTGTACGTAGTCGTGATACTATTACTGATTTC
AACAATCCATTGGTAACTGCATATTATGCTGTTGATTATATTAAAAATGCAAAAGGCACA
AACTACTGGCGCAATCGTGTACTTAAAGTTGCCAAAGAATGGGAAGGTAAAATCAATTTT
GCTATTGCTGCTAAAGATGAATTCCAACATGAATTGAATGAATATGGTTACGATTATGTC
GGTGATAAACCAATAATTTTGGCTCGTGACGCTCAAAATCAAAAGTTCATCATGAAAGAT
GAGTTTTCTGTTGACAATCTTCAAGCATTTGTCAATGATCTTTATGAAGGCAATCTGGAG
CCTTACGTTAAATCAGAAGCAATTCCAGTCGATCAAGATGGCCCAGTTACAGTTGTAGTT
GCAAAGAACTTTAATGAGGCTGTTCCAAAAGATAAGGATGTTTTAATCGAATTCTACGCA
CCATGGTGTGGTCATTGCAAAAAATTAGCTCCAACATTCGATGAATTAGGAACAAAATTG
AAGGGTGAAGATGTTGTTATTGCCAAAATGGATGCTACTGCAAACGATGTTCCTCCTCAA
TTTGATGTTCGCGGATTCCCGACACTCTTCTGGTTGCCTAAGGGCGCTCATGATAAACCA
GTTAGATACGATGGCGGTCGTGAATTGAACGATTTTATCAGCTACATCAGTAAACACGCT
ACAAATGAATTAAAAGGATACGATCGCTCTGGAAACGAAAAGAAACAAAAGACAGAATTG
TAA

>g10334.t30 Gene=g10334 Length=419
MRTDDPPITLVKVDCTEGGKDTCSKFGVSGYPTLKIFRNGENPQDYNGPRGIVKYMRAQV
GPSSKDLLTVEAYEKFLGVQEGAVVGFFEKETDLKTVFLKYADLQREKLRFAHSSDPEIL
KKVGETNAILLYRAPQLSNKFEPSFVKFTGKDSSDLKEFVKKNFHGLVGVRSRDTITDFN
NPLVTAYYAVDYIKNAKGTNYWRNRVLKVAKEWEGKINFAIAAKDEFQHELNEYGYDYVG
DKPIILARDAQNQKFIMKDEFSVDNLQAFVNDLYEGNLEPYVKSEAIPVDQDGPVTVVVA
KNFNEAVPKDKDVLIEFYAPWCGHCKKLAPTFDELGTKLKGEDVVIAKMDATANDVPPQF
DVRGFPTLFWLPKGAHDKPVRYDGGRELNDFISYISKHATNELKGYDRSGNEKKQKTEL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g10334.t30 CDD cd02961 PDI_a_family 4 56 4.72794E-14
17 g10334.t30 CDD cd03073 PDI_b’_ERp72_ERp57 168 273 1.63235E-38
19 g10334.t30 CDD cd02995 PDI_a_PDI_a’_C 294 395 1.88176E-50
14 g10334.t30 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 59 1.4E-12
15 g10334.t30 Gene3D G3DSA:3.40.30.10 Glutaredoxin 60 170 2.2E-30
16 g10334.t30 Gene3D G3DSA:3.40.30.10 Glutaredoxin 173 276 1.4E-34
13 g10334.t30 Gene3D G3DSA:3.40.30.10 Glutaredoxin 282 418 1.5E-40
4 g10334.t30 PANTHER PTHR18929:SF60 PROTEIN DISULFIDE-ISOMERASE 8 403 8.1E-126
5 g10334.t30 PANTHER PTHR18929 PROTEIN DISULFIDE ISOMERASE 8 403 8.1E-126
8 g10334.t30 PRINTS PR00421 Thioredoxin family signature 313 321 5.3E-6
6 g10334.t30 PRINTS PR00421 Thioredoxin family signature 321 330 5.3E-6
7 g10334.t30 PRINTS PR00421 Thioredoxin family signature 361 372 5.3E-6
3 g10334.t30 Pfam PF00085 Thioredoxin 7 51 1.3E-8
1 g10334.t30 Pfam PF13848 Thioredoxin-like domain 89 272 2.5E-32
2 g10334.t30 Pfam PF00085 Thioredoxin 295 396 1.0E-27
20 g10334.t30 ProSitePatterns PS00194 Thioredoxin family active site. 314 332 -
23 g10334.t30 ProSiteProfiles PS51352 Thioredoxin domain profile. 273 400 15.679
12 g10334.t30 SUPERFAMILY SSF52833 Thioredoxin-like 4 57 1.72E-10
11 g10334.t30 SUPERFAMILY SSF52833 Thioredoxin-like 65 164 6.96E-12
10 g10334.t30 SUPERFAMILY SSF52833 Thioredoxin-like 165 292 7.78E-17
9 g10334.t30 SUPERFAMILY SSF52833 Thioredoxin-like 259 399 3.43E-33
21 g10334.t30 TIGRFAM TIGR01130 ER_PDI_fam: protein disulfide isomerase 3 418 2.7E-129
22 g10334.t30 TIGRFAM TIGR01126 pdi_dom: protein disulfide-isomerase domain 298 398 1.5E-34

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0003756 protein disulfide isomerase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed