Gene loci information

Transcript annotation

  • This transcript has been annotated as Protein disulfide-isomerase A3.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10334 g10334.t39 TTS g10334.t39 8933125 8933125
chr_1 g10334 g10334.t39 isoform g10334.t39 8934020 8935590
chr_1 g10334 g10334.t39 exon g10334.t39.exon1 8934020 8934407
chr_1 g10334 g10334.t39 cds g10334.t39.CDS1 8934020 8934407
chr_1 g10334 g10334.t39 exon g10334.t39.exon2 8934468 8934696
chr_1 g10334 g10334.t39 cds g10334.t39.CDS2 8934468 8934696
chr_1 g10334 g10334.t39 exon g10334.t39.exon3 8934759 8934836
chr_1 g10334 g10334.t39 cds g10334.t39.CDS3 8934759 8934836
chr_1 g10334 g10334.t39 exon g10334.t39.exon4 8934917 8934967
chr_1 g10334 g10334.t39 cds g10334.t39.CDS4 8934917 8934967
chr_1 g10334 g10334.t39 exon g10334.t39.exon5 8935028 8935088
chr_1 g10334 g10334.t39 cds g10334.t39.CDS5 8935028 8935055
chr_1 g10334 g10334.t39 exon g10334.t39.exon6 8935429 8935590
chr_1 g10334 g10334.t39 TSS g10334.t39 8935652 8935652

Sequences

>g10334.t39 Gene=g10334 Length=969
ATGAAATTACTTGTTTTTCTGTCATTTTTGTTTGTTGCTGAGTTGGCTCTCTCGGCTGAG
AGTGATGTTCTTGAATTGACTGATTCTGATTTTGAAACTACAATCAAAGAATATCCAACA
GTGTTGGCAATGGTAATATAAAATAATAATTACAATAATATACTTAAACCAGAATATGCC
AAAGCAGCAGAATTGATGAGAACTGATGATCCTCCAATTACTCTTGTCAAAGTTGATTGT
ACAGAAGGCGGCAAGGATACTTGCAGCAAATTCGGTGTTTCTGGATATCCCACTCTCAAA
ATTTTCAGAAACGGTGAAAATCCTCAGGATTATAATGGTCCACGTGAAGCAAGTGGTATT
GTGAAATATATGAGAGCACAAGTTGGTCCATCATCAAAGGATCTTCTAACAGTTGAAGCA
TATGAAAAGTTCTTGGGTGTTCAAGAGGGTGCCGTAGTTGGATTCTTTGAAAAAGAAACG
GATTTGAAGACTGTTTTCTTAAAATATGCCGATTTGCAACGTGAGAAACTTCGCTTTGCA
CATTCAAGTGATCCAGAAATTCTCAAGAAAGTTGGCGAAACAAACGCTATTCTTCTTTAT
CGTGCACCACAATTGAGTAATAAGTTTGAACCATCTTTTGTTAAATTCACTGGAAAAGAT
TCAAGTGATCTTAAAGAATTTGTTAAGAAGAACTTCCACGGTTTAGTTGGTGTACGTAGT
CGTGATACTATTACTGATTTCAACAATCCATTGGTAACTGCATATTATGCTGTTGATTAT
ATTAAAAATGCAAAAGGCACAAACTACTGGCGCAATCGTGTACTTAAAGTTGCCAAAGAA
TGGGAAGGTAAAATCAATTTTGCTATTGCTGCTAAAGATGAATTCCAACATGAATTGAAT
GAATATGGTTACGATTATGTCGGTGATAAACCAATAATTTTGGCTCGTGACGCTCAAAAT
CAAAAGTTC

>g10334.t39 Gene=g10334 Length=258
MRTDDPPITLVKVDCTEGGKDTCSKFGVSGYPTLKIFRNGENPQDYNGPREASGIVKYMR
AQVGPSSKDLLTVEAYEKFLGVQEGAVVGFFEKETDLKTVFLKYADLQREKLRFAHSSDP
EILKKVGETNAILLYRAPQLSNKFEPSFVKFTGKDSSDLKEFVKKNFHGLVGVRSRDTIT
DFNNPLVTAYYAVDYIKNAKGTNYWRNRVLKVAKEWEGKINFAIAAKDEFQHELNEYGYD
YVGDKPIILARDAQNQKF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10334.t39 CDD cd02961 PDI_a_family 4 59 0
8 g10334.t39 Gene3D G3DSA:3.40.30.10 Glutaredoxin 1 63 0
7 g10334.t39 Gene3D G3DSA:3.40.30.10 Glutaredoxin 64 173 0
9 g10334.t39 Gene3D G3DSA:3.40.30.10 Glutaredoxin 175 258 0
3 g10334.t39 PANTHER PTHR18929:SF60 PROTEIN DISULFIDE-ISOMERASE 8 258 0
4 g10334.t39 PANTHER PTHR18929 PROTEIN DISULFIDE ISOMERASE 8 258 0
2 g10334.t39 Pfam PF00085 Thioredoxin 7 60 0
1 g10334.t39 Pfam PF13848 Thioredoxin-like domain 92 257 0
6 g10334.t39 SUPERFAMILY SSF52833 Thioredoxin-like 4 64 0
5 g10334.t39 SUPERFAMILY SSF52833 Thioredoxin-like 68 167 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed