General information for g10341.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10341 is located on chr_1: 8946698..8947616 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10341 | g10341.t4 | TSS | g10341.t4 | 8945855 | 8945855 |
| chr_1 | g10341 | g10341.t4 | isoform | g10341.t4 | 8945886 | 8947443 |
| chr_1 | g10341 | g10341.t4 | exon | g10341.t4.exon1 | 8945886 | 8946170 |
| chr_1 | g10341 | g10341.t4 | cds | g10341.t4.CDS1 | 8945886 | 8946170 |
| chr_1 | g10341 | g10341.t4 | exon | g10341.t4.exon2 | 8946398 | 8946778 |
| chr_1 | g10341 | g10341.t4 | cds | g10341.t4.CDS2 | 8946398 | 8946778 |
| chr_1 | g10341 | g10341.t4 | exon | g10341.t4.exon3 | 8946835 | 8947443 |
| chr_1 | g10341 | g10341.t4 | cds | g10341.t4.CDS3 | 8946835 | 8946960 |
| chr_1 | g10341 | g10341.t4 | TTS | g10341.t4 | 8947445 | 8947445 |
Sequences
>g10341.t4 Gene=g10341 Length=1275
ATGGCAATGCTGAAATTAAAAAAATTTGATGCTGCAGAGATAAAGAAATACCGTGTAGTT
GAAAATCGCTTTGTTTGTTCTATTTGCATTGAAATATTTACAACAATTGAATTATTAAAG
AATCATTATATTGATTTTCATAGTTTTAAAGAGAAAAAAGTTGATATACCACTTCCAAAT
GAGGATTATTTTAGTGAATCTAGCGAACAATCTATAGTTGAAGCAGCACCAAAGGAAAGT
TATTTCTCACCGAAAATTTGCAATATTTGTGAAATGAAGTTTAAAATTCATGCTCGTACT
CATTTATCAGCTGATGATAGTGCTGCCAAAGTCTTGTCATGTAATATTTGTTTAAAATTC
AAATGTTCTGACCCCAGTGTAATGAGTAAACACAAAAAATTGCATGATCCTTCTGCTGTT
GGAAAATATAAATGCCAAAGTTGCAACTATCTTGCTATTCAAGCTACGGGTCTTAAGAAT
CACATGAAATTCAAGCATGCAGAATTATTCTTAAAAATGAAGTGCAATCAATGTGAATTT
GTTTCTGTTAATCCCGATCGTTTAAAACAACACATTTTAAACCATGAAAAAGGATTAATA
GAACAAAAGGAGGAAACTCAAAAAATTGAGGAAATTTCAAAATCTACTTTAAATACTAGC
ATGGAGATATCATCAGATTGTTTTTTGCCAATTGAAAGTGCCGATTCAATTCACAATCAT
GACCAAGGAGGTGTCACTATTATACACACTAATAACTCATCTACTGTACACAGTGAAGAT
GCAGTATTTTAATGTTTTACATATTTATAGTTGTTCGAAGTAAATTAAATGTTGCCCATG
CTTTTTGGCATATTTGTGAAAAGAGATAGATTGAGGCAACAAGAAAATTATTTCCAATAT
TAATTTTGCTTGGACGCTGTGCTCGCATGATGATAAATTGAATTTTCTTTTGATTGTCAA
TAGACTTTGCGTACCATTCAGATTTAAAGGCAGCTTCAGATATTAGTTTTGATGCGTCAA
TAAGACGTTCACCAAAATATAAAAGAAAAAAGAGCTGACTCATTCCAACACCAACTAGAG
GGATTTCAATCAGGAAATTTCGTACATTTGCATTTCTTGTCATTATAGAAAAAAGCATGA
CTGATAAATTGATGAAACTAGCTGAACAGTTTGCAAGAAAATATGGAGAATAAATCTCAT
TGAGAATATTTGATTTGCTGTAAAATAATTTTTTATTATTAAAAAATTCCTTTAAATAAA
ATTTTTTAACCTACT
>g10341.t4 Gene=g10341 Length=263
MAMLKLKKFDAAEIKKYRVVENRFVCSICIEIFTTIELLKNHYIDFHSFKEKKVDIPLPN
EDYFSESSEQSIVEAAPKESYFSPKICNICEMKFKIHARTHLSADDSAAKVLSCNICLKF
KCSDPSVMSKHKKLHDPSAVGKYKCQSCNYLAIQATGLKNHMKFKHAELFLKMKCNQCEF
VSVNPDRLKQHILNHEKGLIEQKEETQKIEEISKSTLNTSMEISSDCFLPIESADSIHNH
DQGGVTIIHTNNSSTVHSEDAVF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10341.t4 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 140 | 223 | 8.5E-9 |
| 6 | g10341.t4 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 26 | 47 | - |
| 8 | g10341.t4 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 24 | 52 | 8.58 |
| 2 | g10341.t4 | SMART | SM00355 | c2h2final6 | 24 | 47 | 0.86 |
| 5 | g10341.t4 | SMART | SM00355 | c2h2final6 | 85 | 101 | 290.0 |
| 3 | g10341.t4 | SMART | SM00355 | c2h2final6 | 112 | 135 | 13.0 |
| 4 | g10341.t4 | SMART | SM00355 | c2h2final6 | 143 | 166 | 0.078 |
| 1 | g10341.t4 | SMART | SM00355 | c2h2final6 | 173 | 195 | 0.77 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed