General information for g10341.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10341 is located on chr_1: 8946698..8947616 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10341 | g10341.t5 | TSS | g10341.t5 | 8945855 | 8945855 |
| chr_1 | g10341 | g10341.t5 | isoform | g10341.t5 | 8945886 | 8947443 |
| chr_1 | g10341 | g10341.t5 | exon | g10341.t5.exon1 | 8945886 | 8946778 |
| chr_1 | g10341 | g10341.t5 | cds | g10341.t5.CDS1 | 8946494 | 8946778 |
| chr_1 | g10341 | g10341.t5 | exon | g10341.t5.exon2 | 8946835 | 8947443 |
| chr_1 | g10341 | g10341.t5 | cds | g10341.t5.CDS2 | 8946835 | 8946960 |
| chr_1 | g10341 | g10341.t5 | TTS | g10341.t5 | 8947445 | 8947445 |
Sequences
>g10341.t5 Gene=g10341 Length=1502
ATGGCAATGCTGAAATTAAAAAAATTTGATGCTGCAGAGATAAAGAAATACCGTGTAGTT
GAAAATCGCTTTGTTTGTTCTATTTGCATTGAAATATTTACAACAATTGAATTATTAAAG
AATCATTATATTGATTTTCATAGTTTTAAAGAGAAAAAAGTTGATATACCACTTCCAAAT
GAGGATTATTTTAGTGAATCTAGCGAACAATCTATAGTTGAAGCAGCACCAAAGGAAAGT
TATTTCTCACCGAAAATTTGCAATATTTGTGAAATGAAGTTTAAAGTACATCATCATTAT
ACTTTTCTTTTTAATTTTTATTAATAGTGAGTATTTTTCAGAATCAAAAAACACTCTCAA
AACATATCAAACACGTACATAATAAATTAAAACAACTTATTTGTCAAGTTTGTAATAAAC
AATTTACCAGAAAATCGACGCTAGATGTGAGTTATTCAATACATCTTAAACAATTATATA
TTTCCATATATTTTATTTAAACAATTAAATAGATTCATGCTCGTACTCATTTATCAGCTG
ATGATAGTGCTGCCAAAGTCTTGTCATGTAATATTTGTTTAAAATTCAAATGTTCTGACC
CCAGTGTAATGAGTAAACACAAAAAATTGCATGATCCTTCTGCTGTTGGAAAATATAAAT
GCCAAAGTTGCAACTATCTTGCTATTCAAGCTACGGGTCTTAAGAATCACATGAAATTCA
AGCATGCAGAATTATTCTTAAAAATGAAGTGCAATCAATGTGAATTTGTTTCTGTTAATC
CCGATCGTTTAAAACAACACATTTTAAACCATGAAAAAGGATTAATAGAACAAAAGGAGG
AAACTCAAAAAATTGAGGAAATTTCAAAATCTACTTTAAATACTAGCATGGAGATATCAT
CAGATTGTTTTTTGCCAATTGAAAGTGCCGATTCAATTCACAATCATGACCAAGGAGGTG
TCACTATTATACACACTAATAACTCATCTACTGTACACAGTGAAGATGCAGTATTTTAAT
GTTTTACATATTTATAGTTGTTCGAAGTAAATTAAATGTTGCCCATGCTTTTTGGCATAT
TTGTGAAAAGAGATAGATTGAGGCAACAAGAAAATTATTTCCAATATTAATTTTGCTTGG
ACGCTGTGCTCGCATGATGATAAATTGAATTTTCTTTTGATTGTCAATAGACTTTGCGTA
CCATTCAGATTTAAAGGCAGCTTCAGATATTAGTTTTGATGCGTCAATAAGACGTTCACC
AAAATATAAAAGAAAAAAGAGCTGACTCATTCCAACACCAACTAGAGGGATTTCAATCAG
GAAATTTCGTACATTTGCATTTCTTGTCATTATAGAAAAAAGCATGACTGATAAATTGAT
GAAACTAGCTGAACAGTTTGCAAGAAAATATGGAGAATAAATCTCATTGAGAATATTTGA
TTTGCTGTAAAATAATTTTTTATTATTAAAAAATTCCTTTAAATAAAATTTTTTAACCTA
CT
>g10341.t5 Gene=g10341 Length=136
MSKHKKLHDPSAVGKYKCQSCNYLAIQATGLKNHMKFKHAELFLKMKCNQCEFVSVNPDR
LKQHILNHEKGLIEQKEETQKIEEISKSTLNTSMEISSDCFLPIESADSIHNHDQGGVTI
IHTNNSSTVHSEDAVF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10341.t5 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 13 | 96 | 0.00e+00 |
| 2 | g10341.t5 | SMART | SM00355 | c2h2final6 | 16 | 39 | 7.80e-02 |
| 3 | g10341.t5 | SMART | SM00355 | c2h2final6 | 46 | 68 | 7.70e-01 |
| 1 | g10341.t5 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 16 | 68 | 6.15e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
