General information for g10348.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Proteasome inhibitor PI31 subunit.
Parent gene
- The parent gene g10348 is located on chr_1: 9050066..9050866 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10348 | g10348.t1 | TTS | g10348.t1 | 9049838 | 9049838 |
| chr_1 | g10348 | g10348.t1 | isoform | g10348.t1 | 9049902 | 9050866 |
| chr_1 | g10348 | g10348.t1 | exon | g10348.t1.exon1 | 9049902 | 9050007 |
| chr_1 | g10348 | g10348.t1 | cds | g10348.t1.CDS1 | 9049902 | 9050007 |
| chr_1 | g10348 | g10348.t1 | exon | g10348.t1.exon2 | 9050066 | 9050451 |
| chr_1 | g10348 | g10348.t1 | cds | g10348.t1.CDS2 | 9050066 | 9050451 |
| chr_1 | g10348 | g10348.t1 | exon | g10348.t1.exon3 | 9050512 | 9050664 |
| chr_1 | g10348 | g10348.t1 | cds | g10348.t1.CDS3 | 9050512 | 9050664 |
| chr_1 | g10348 | g10348.t1 | exon | g10348.t1.exon4 | 9050729 | 9050866 |
| chr_1 | g10348 | g10348.t1 | cds | g10348.t1.CDS4 | 9050729 | 9050866 |
| chr_1 | g10348 | g10348.t1 | TSS | g10348.t1 | 9050933 | 9050933 |
Sequences
>g10348.t1 Gene=g10348 Length=783
ATGTCGTCTCATTTCGGCATTGATCTTTTATTTGAAACACAAAAAGAAAAAATCAATAGT
GAAAATGATGTTTTAATTATTGTTATCCATTGGATTTTATGCAAAAATAAATTTCGTTCA
GTTGGTGTTGGCGATAACAAAATATACAGTGATGAAGATCGTCCAACAGAACTTTTACCA
CAAGGCTGGAATGATAATCAGAAAGCATACACACTTCGCTATGTACTTGATAAAAATATT
TTCATCCTTTATGGAATTGTCTCTGATGAAACTATTATAATAAATTTATTGGATGGAAAA
ACCTTGAAAACAGCTTCATTGGTATTAAATCCTAAAGAAGTCATAAAGGCAAAAAGTGGA
ATTGCTATAGAAGACTTTGTCAATGATAGTAATGCAGTTATTGAAAAAATCACTGATCAA
CTTGTAAAGCCATTAATAAGTAGTGAGACAGCAAAATCGGCAACACCAGGTCCTTCAACA
AATAGAGATCCACTTTTAATTCGACGAGTGAATCCTCCACCTCATTCCGGAATTGTTGAT
CCACGAACAATTGATCCATTAAGAGATATTGGCAGAGGAGATTTAGATCCATTTGGTAGA
GGAGGTGGAATGCTTTTTCAACCTGATTTTCGTCATGAATTTGGTCCACGCAATCCAATA
AATCCGAATGCACCATTACGAATTCCACCTGGTGCTAGATATGATCCACCAAATCCTTTT
GGAAGACTAGACCCAGACAACGATCACATTAGACCTCCTGGATATGATGACATGTTCATG
TAA
>g10348.t1 Gene=g10348 Length=260
MSSHFGIDLLFETQKEKINSENDVLIIVIHWILCKNKFRSVGVGDNKIYSDEDRPTELLP
QGWNDNQKAYTLRYVLDKNIFILYGIVSDETIIINLLDGKTLKTASLVLNPKEVIKAKSG
IAIEDFVNDSNAVIEKITDQLVKPLISSETAKSATPGPSTNRDPLLIRRVNPPPHSGIVD
PRTIDPLRDIGRGDLDPFGRGGGMLFQPDFRHEFGPRNPINPNAPLRIPPGARYDPPNPF
GRLDPDNDHIRPPGYDDMFM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10348.t1 | Gene3D | G3DSA:3.40.1000.30 | - | 1 | 159 | 0 |
| 2 | g10348.t1 | PANTHER | PTHR13266 | PROTEASOME INHIBITOR | 6 | 258 | 0 |
| 1 | g10348.t1 | Pfam | PF11566 | PI31 proteasome regulator N-terminal | 16 | 122 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K06700 (proteasome inhibitor subunit 1 (PI31))
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
