Gene loci information

Transcript annotation

  • This transcript has been annotated as Fatty acid synthase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10357 g10357.t1 TSS g10357.t1 9090730 9090730
chr_1 g10357 g10357.t1 isoform g10357.t1 9090845 9098598
chr_1 g10357 g10357.t1 exon g10357.t1.exon1 9090845 9091058
chr_1 g10357 g10357.t1 cds g10357.t1.CDS1 9090845 9091058
chr_1 g10357 g10357.t1 exon g10357.t1.exon2 9091123 9091485
chr_1 g10357 g10357.t1 cds g10357.t1.CDS2 9091123 9091485
chr_1 g10357 g10357.t1 exon g10357.t1.exon3 9091544 9091637
chr_1 g10357 g10357.t1 cds g10357.t1.CDS3 9091544 9091637
chr_1 g10357 g10357.t1 exon g10357.t1.exon4 9091693 9091985
chr_1 g10357 g10357.t1 cds g10357.t1.CDS4 9091693 9091985
chr_1 g10357 g10357.t1 exon g10357.t1.exon5 9092057 9092070
chr_1 g10357 g10357.t1 cds g10357.t1.CDS5 9092057 9092070
chr_1 g10357 g10357.t1 exon g10357.t1.exon6 9092121 9093637
chr_1 g10357 g10357.t1 cds g10357.t1.CDS6 9092121 9093637
chr_1 g10357 g10357.t1 exon g10357.t1.exon7 9093700 9093929
chr_1 g10357 g10357.t1 cds g10357.t1.CDS7 9093700 9093929
chr_1 g10357 g10357.t1 exon g10357.t1.exon8 9093988 9094161
chr_1 g10357 g10357.t1 cds g10357.t1.CDS8 9093988 9094161
chr_1 g10357 g10357.t1 exon g10357.t1.exon9 9094220 9096390
chr_1 g10357 g10357.t1 cds g10357.t1.CDS9 9094220 9096390
chr_1 g10357 g10357.t1 exon g10357.t1.exon10 9096446 9096795
chr_1 g10357 g10357.t1 cds g10357.t1.CDS10 9096446 9096795
chr_1 g10357 g10357.t1 exon g10357.t1.exon11 9096852 9098598
chr_1 g10357 g10357.t1 cds g10357.t1.CDS11 9096852 9098598
chr_1 g10357 g10357.t1 TTS g10357.t1 9098727 9098727

Sequences

>g10357.t1 Gene=g10357 Length=7167
ATGACTTCTATTGAAATTCAACCAAAGCAAAAGAAATTATTTTCGCGAATTTATCCGGAA
ACGCCTGATGATGAAATTGTCATTAGTGGTATCTCTGGTAGATTTCCAAGTTCATCGAAT
CTTCATGAATTCGCTTTCAATCTTTATAATAAGGTTGATATGGTTGATGATGATGAAAGA
AGATGGAAACATACCAATCCAGAAATTCCAAGAAGAATGGGAAAGATCAATAATTTGGAA
AAATTCGATGCAACTTTCTTTGGCGTTCATTTTAAGCAAGCTCATACTATGGATCCGCAA
TGTAGAATGTTACTTGAGCATGCATATGAAGCTGTTCTTGACGCAGGGATTAATCCAAGA
TCGTTAAGAGGCAGTCGAACTGGTGTTTACATTGGTGCATGCTTTGCTGAATCAGAAAAG
ACTTGGTTTTACGAAAAAGTGTCGACTGGTGGTTTCGGTATCACTGGTTGTGCAAGAGCT
ATGTTAGCCAATAGAATTTCATTTACTTTGGGTCTAACTGGTCCATCTTTTCTATTGGAC
ACAGCATGCTCTTCATCCATGTATGCTCTTGATTGCGCATTCAATGCAATTCGAATGGGT
GAAATTGATGCTGCATTGGTTGGTGGATCAAATTTGTTGCTTCATCCATATGTTACACTT
CAATTTGCACGTTTGGGTGTTCTTGCACCAAGTGGCTATTGTCGTCCGTTTGATAAAGAC
GGAAGTGGATATACAAGGTCTGAAGCAGTTTGTGTGATGTATCTTCAAAAAGCAAAAAAT
GCTAAACGAGTTTATGCAAATCTTCTATATTCAAAGACAAATTGTGATGGGTATAAGGAA
GAGGGCATAACTTATCCTAGTGGCAAAATGCAAATGAAATTACTTAAAGAATTTTATGAT
GATCTAGAACTTCCAGCTAATAAAGTTGACTATGTTGAAGCACATAGCACAGGCACAATT
GTGGGCGATCCTGAAGAGGTTAAAGCGCTTGACACTGTTTTCTGCACGAGTCGTAACAAA
CCGTTACCAGTTGGATCAGTTAAATCAAATATGGGACATTCTGAAAGTACAGCTGGTGCG
TGCTCGATTGCAAAAATGATTTTTGCATTTGAGACTCAAAAAATTGCACCAAATATAAAT
TTTGAAGTCATTCGTCCTGGTCTTGAGTCATTAGAAGCTGGTAGATTGCGTGTTGTAGCA
GAAACTGAAGAACTTTCAGGTCCACTTATCAGCGTTAACTCTTTTGGATTCGGCGGCGGA
AATGCACACGCTTTGTTCAGACAACATTCAAAAGTGAAGGTCAATCAAGGCATTCCAAAT
GATGATATTCCTCGATTGATTTTATGGTCAAGTAGAACAGAAGAAGGTGTGAATTCAATC
CTTGATAGTGTAATGAAACAACCACTTGATGCTGAATATGTTGGACTATTACATAATTGT
GTTGCTGGTGAATCTGCTCCAGCCAATATTTATAGAGGTTATGGTATTTTTGCACAAAAT
GATCAAAGCGTAAATGCAACATGTCTCAATAGAGATGTGAAACATTTTACTGGATTTAAG
AGACCAGTTGTTTGGGTTTATTCTGGCATGGGATCACAATGGAATACAATGGGCGCTGAT
CTCATGAGAATTCCAATTTTTGCTGAATCAATTGAACGCAGTCATAAAATTTTAGAAAAG
CGAGGATTGAATCTTAAGAGTATTTTAACATCACAAGAACCAAAACTTTTTGATAATATT
TTAAATTCCTTTGTTGGCATCGCTGCTATTCAAATTGCACTTACTGACATCTTGAAAGCA
CTAGATCTTGAGCCTGATTATATTATTGGACATTCTGTTGGTGAATTGGGTTGTGCCTAT
GCAGATGGATGTTTTACTGCTGAAGAAATGATTCTTTCATCTTATTCACGTGGCATGGCA
AGTCTTGAAACAAATGTTGTTGTTGGTTCAATGGCAGCTGTCGGTTTAAGTTATAAGAAA
TTGAAGCCAATGATACCTGATGGAATTGAAATTGCATGTCACAACTCAGCTGATTCATGC
ACAATTTCAGGACCGGCTGAAAATGTTGCAAAATATGTTGCAGAGCTGAAAGCTAAAAAT
ATTTTTGCTAAAGAAGTCAATTGCTCAAAGATTCCTTATCACTCCTCCTACATTCAAGAA
ATGGGACCAAATTTGCTTGCTCGTTTAAATGATGTCATCAAAAGTCCCAAAAGAAGATCT
TCAAAATGGCTCAGTTCAAGTGTACCAAAGTCACGATGGGAAGAGGAACAATTTCAATTT
TCATCACCATTTTATCATACAAATAATCTATTAAGTTCAGTTCTGTTCGAAGAAACATCA
GTTTTTCTTCCTCGCAATGCATTGACAATTGAAGTGGCTCCTCATAGCTTATTGCAAGCA
ATTCTACGGAAATCAATGCCCGAAGCAGTTCATATTGGATTGACACAAAGAGGAAATAAG
AGCAACTCAACTTTCTTCCTGAGTGCACTCGGCTCGATTTATGAAAATGGTATTGATTTT
GATGTAAGTCGACTTTATCCGCCAGTCGATTTTCCTGTTTCACGAGGTACACCGATGATT
AGTCCATTAATGAAATGGGACCATAGCGAGGATTGGTTTGTAACGAGATTTGAAAGTCAA
AAGTCAAATCGAAGTGGTGAACGTCATGTTGTAATAAATCTTGCTGACCAAGAATATGAA
TATATTGTAGGTCATGTTATTGATGGAAGAATACTTTTCCCAGCAACAGCTTATCTTTAT
GTCGTTTGGGAAACTTTAGGTTTGATGATTGGCGTTTACTTCTTTGAAGTTGGAGTAGTT
TTTGAAGATGTGAAATTTATGAGAGCAACAGCTCTTCCGAAAAATCAAGATATCGAATTT
GTTGTTATGATTCAACCAGGATCTGGAAGATTTGAAATTACTGAAGGAACAAGTGTTCTT
GCAACAGGTTATGTAAAAATTGTTGATAATGTCAAGCTGACAGATATTGAAAAACCAGTA
GATAATGGATATCCTAATCTTCTTCAAAGAGATTTTTATAAAGAACTTCGTTTACGTGGT
TATCATTATCATAGTCTTTTCAAATGTGTTGAAGAAGCTCGAGGTGATGGCATGATTGGA
AAGGTTAAATGGAACTCTAATTGGGTCTCATTTATGGATTGTCTTCTTCAAATTCATATT
GTTGGTCAAGACTCACGTGCTTTGCTATTACCAACAGGCATTGAAAAACTCTCAATAAAT
CCTAAAGTTCATCAACAATTAGTTCATTCATTTGACAATGAAGGCATTATATTAGATGTT
TATACTAATAAAGAATTGAATCTCTTACGCTGTGGTGGAATTGAATTTCGTGGATTACAG
GCTAATCCTGTTTCAAGAAGACGTCCGCCTGGCATTCCCGTTCTAGAGACTTATCAATTT
ATTTCACATCTGCCAACTCCTTATTTGAATAAGATTGATGCAAGCAGATTCTGTGTTCAA
TTGGCTCTTGAAAATTTACCAACTAGCAAAGTTTTAATTGTTGAAATTGATCAAAATGAT
GGTAGAGAACCAATAAGTGATTTTATAGCTCAAGCTTTAGGTGATTTGCCTCTAGTTACT
GCTGAATTGAATTATCTGAGTACAAAAACTATCGACTTAGGTAATGTCATTGTGAGCGAT
GCAAAACTTTCTACATTTAAGAATGCTTTTATGGTGATTAATAGTCGAAGTTTAAGTGAC
AAAAAATTCTTAGACAATGTTGTCAATAACCTTACAAATGGTGCATTCTTAATTTTGAGA
GAATCAAATGAAATTAAATTGCAATTGCTTAAAGAACTTCCAACGCATCTTCAGCTCATT
GCAATAATACCAACTGACAATGAAACAATAATAATGTTACAATGTGGTAAGAAAATGCAA
AGTCAAACACAAAAAGTTATTCAAGTGTCATCGCAAAACTATGATTGGATAGAAGATTTG
AAGAAAGCAGTGAAAGAAGGTCCAGTTTTAGCATTTTCTGAAAAGGAAGAATTTTCAGGA
ATAATTGGTCTTGTTAATTGCATTCGTAAAGAACCAAATGGTTTAAATTTAAAATGTGTT
TTGGTCGATGACTATCGTGCACCTAAATTTAACTTTGGTAATGAATTTTATAAATCATTC
CTTGATCAAGGCCTTGCTATTAATGTTTTTAAAAATGGAAAATGGGGATCATATCGTCAT
TTACAACTCATACAAAAGTATGAAAGTATGCCAAGAATTGATCATTGTTATGCTAATTCA
CTTGTTCGCGGTGATTTATCTTCTATGACATGGCTATATGGGCCTTATAATCATGGAAAA
CCTGATGGAGAAATTTGTAGAATTCAATATGCATCACTCAATTTCCGTGATGTAATGCTT
GCTACTGGAAAATTGACTGCTGAAGTTTTCGGTTCAGGCCGTCTTGATCAGCTTTGTATT
CTTGGTTTTGAATATGCTGGAGTTACTGAGAGTGGTCGCAAAGTTATGGGAATGGTAATA
TCAGGATCACTTGCTACACACATTAAAGTTGATGATACTTTACTATGGGATGTGCCTCAA
GGTTGGACTCTACAAGAAGCAGCTACAATTCCAGTCGTTTATGCTACAGTCTATAGTGCA
TTCTTTTTAACAACAAAAATTGAGAAAGGCAAGTCAATTTTAATTCATGCTGGAAGTGGC
GGTGTTGGATTAGCTGCAATTCGTGTCGCTTTCGCTTATGGCTTAGAAGTTTATACAACA
GTCAGTACTGAAGAGAAGAAAAACTTTTTGTTAAATGAATTTCCTAAATTAAAGAGAGAA
AACATTGGAAATTCGAGAGATACAAGTTTTGAAGATATGATTGCAGTGAGAACAAAAGGC
AAAGGAGTTGACTATGTTTTAAATTCATTAGCTGAAGAAAAATTGCATGCATCAATTAGA
TGTCTTGGAAAAGGTGGAGTTTTCTTAGAAATCGGCAAATTTGATCTTGCAAATGATACC
AAGATTGGATTGGGAGCATTTTTGAAACAACTTTCATTCCATTCCATTTTAGTTGATTTG
CTTTTCACTGGAACTCATGAAGATAAACTAATTCTTCAAAGAATTCTTGAGCGTGATCTC
GAAAAAGGCATCATTAAACCTCTTAAGACGACAGTTTTTGAAGCTCATGAAGTTGTGGAA
GCTTTTAGATATTTAGCAAGTGGCAAGCATGTTGGTAAAGTTATGCTTAAAATTAGAGAA
GATCCTTACGATGATGCAACTCTTCCAATAACTGCAATTCCACGCACTTATTGCTATCCA
TATTATTCTTATATTATTCCTGGCGGTTTGGGTGGTTTCGGTCTTGAACTTGCTGATTGG
CTTGTATTGAGAGGTTGTAAAAAATTGGTTTTAAGTTCAAGTCGTGGAGTAACTAAACAA
TATCAAGCTTTTCGCATTCGCATTTGGGAGTCATATGGAGTTGAAGTTACAGTTAATACT
TCTGATATATCATCTAAGGCTGGCTGTGAAAAATTGATTCGTGATGCAATGAAGTTGGGA
CCAGTTGGTGGCATTTTCAATTTGGCTGTGATTTTACGTGATAGTATATTTGAAAATCAA
GACGTGACAAAGTTTGTTGAATGCATGGCACCAAAAGCAATTGCAACAAAATATCTTGAT
GAAATATCACGAATTTTATGTCCTGAGTTGCAATATTTTGTTATTTTCTCAAGTGTTTCT
TGTGGAAGAGGTAATGCTGGCCAAAGTAATTATGGTATGGCAAATTCTGTAATGGAAAAG
ATTATGGAACAACGACATAATCTTGGATTGCCTGCTAAAGCTATCCAATGGGGTGCAGTT
GGTGAAGTTGGCTTAGTTGCTGATATGCAGGAAGATATGTTAGATATGGAGATTGGCGGA
ACATTACAGCAAAGAATTTCATCATGTTTAGAAGAACTTGATGCACTTTTAGCTGCAGAA
CAACCTTTGGTTTCAAGCATGGTTGTAGCTGAAAAGAAAGTGAAAGTTGGTGCTGGTGCT
AGTGTAATTGATGCTGTAATGAGCATCATGTCAATTCGTGATATGAAATCAGTCTCTATG
GATGCAACACTTTCTGAAATGGGCATGGATTCATTGATGGCAGTTGAAATTCGTCAAATG
CTTGAACGTGAATATGAACTTTTCCTTTCCCCACAAGATTTACGTTCATTGACGTTTATG
AAATTGCAAGAATTAACAACTGCACAAGAAGGCGTTGAAAATGAGACTGCAAAGATTAAG
TTTGCTACTGAAGATGTTCCGGCAGGTGTTGAGCTTATGTTGAGAAATATAGGTGATGAA
AAGACATCAAGTCAGACAATATTGAGAATGACCTCGCAAGATAATAGTGTCAAGCATAAT
TCTTGCGTACTCTTGATTCCTGGCATAGAAGGTGTTGCAGGAACATTATGGAGAAATGTT
GCTAATGGTCTAACGTTACCTACTTATATGTTGCAATTGATGAGCACAAAGAATCTTACT
CAAATTCAAGATGTTGCTAAAGCCGTTTTCAATAACATCGTTACAGATGTTTTTAATAAA
GACCGTGACCATTTTTACGTTGTTGGTTACAGTTTCGGTTCACTTGTGGCATTGGAAGTT
GTAAAATTACTTGAGGGTATGGGCAAAAAGGGTAAGTTAGTTCTAATCGATGGAGCACCG
ACATTCTTGAAGAAAATGGTAGTCGATCAGATGCCAGTTCATTCTGATGAAGCAGTACAA
AGTGTTATGTTAGCGGGTATCATTCGAACAATTTTCCCTGAAGAAAAACTCGATTTACGA
AAAATTATGGCTGAAAATCCAAGCTTTGAGGAACGTGTTGATGAAATGATTGAACTTTCT
AAAGGTCAATATCTTTATTCAACTGACTATTTGCGTGATATGGCATTCTGCTTATTCCAA
CGCTTGAAAATGGTCATTGATTATAAGTTTGATTACAAGAACATAATTAAAACATCAATC
ACACTTGTTCGACCAACTGAAATTTCAACTGTTGATGTCGATGAAGATTATGGTTTACAA
AAGATTACAAAAGGTGATGTCAATATTAAATATGTTGAAGGAAATCATTTGACAATGCTT
GAAAGTCCAAAACTCATTCAAATCATCAATCAGTTAGATCCAGCATTGGAATCAAATAAA
TCATTCATGAAGCACAATATGATTTAA

>g10357.t1 Gene=g10357 Length=2388
MTSIEIQPKQKKLFSRIYPETPDDEIVISGISGRFPSSSNLHEFAFNLYNKVDMVDDDER
RWKHTNPEIPRRMGKINNLEKFDATFFGVHFKQAHTMDPQCRMLLEHAYEAVLDAGINPR
SLRGSRTGVYIGACFAESEKTWFYEKVSTGGFGITGCARAMLANRISFTLGLTGPSFLLD
TACSSSMYALDCAFNAIRMGEIDAALVGGSNLLLHPYVTLQFARLGVLAPSGYCRPFDKD
GSGYTRSEAVCVMYLQKAKNAKRVYANLLYSKTNCDGYKEEGITYPSGKMQMKLLKEFYD
DLELPANKVDYVEAHSTGTIVGDPEEVKALDTVFCTSRNKPLPVGSVKSNMGHSESTAGA
CSIAKMIFAFETQKIAPNINFEVIRPGLESLEAGRLRVVAETEELSGPLISVNSFGFGGG
NAHALFRQHSKVKVNQGIPNDDIPRLILWSSRTEEGVNSILDSVMKQPLDAEYVGLLHNC
VAGESAPANIYRGYGIFAQNDQSVNATCLNRDVKHFTGFKRPVVWVYSGMGSQWNTMGAD
LMRIPIFAESIERSHKILEKRGLNLKSILTSQEPKLFDNILNSFVGIAAIQIALTDILKA
LDLEPDYIIGHSVGELGCAYADGCFTAEEMILSSYSRGMASLETNVVVGSMAAVGLSYKK
LKPMIPDGIEIACHNSADSCTISGPAENVAKYVAELKAKNIFAKEVNCSKIPYHSSYIQE
MGPNLLARLNDVIKSPKRRSSKWLSSSVPKSRWEEEQFQFSSPFYHTNNLLSSVLFEETS
VFLPRNALTIEVAPHSLLQAILRKSMPEAVHIGLTQRGNKSNSTFFLSALGSIYENGIDF
DVSRLYPPVDFPVSRGTPMISPLMKWDHSEDWFVTRFESQKSNRSGERHVVINLADQEYE
YIVGHVIDGRILFPATAYLYVVWETLGLMIGVYFFEVGVVFEDVKFMRATALPKNQDIEF
VVMIQPGSGRFEITEGTSVLATGYVKIVDNVKLTDIEKPVDNGYPNLLQRDFYKELRLRG
YHYHSLFKCVEEARGDGMIGKVKWNSNWVSFMDCLLQIHIVGQDSRALLLPTGIEKLSIN
PKVHQQLVHSFDNEGIILDVYTNKELNLLRCGGIEFRGLQANPVSRRRPPGIPVLETYQF
ISHLPTPYLNKIDASRFCVQLALENLPTSKVLIVEIDQNDGREPISDFIAQALGDLPLVT
AELNYLSTKTIDLGNVIVSDAKLSTFKNAFMVINSRSLSDKKFLDNVVNNLTNGAFLILR
ESNEIKLQLLKELPTHLQLIAIIPTDNETIIMLQCGKKMQSQTQKVIQVSSQNYDWIEDL
KKAVKEGPVLAFSEKEEFSGIIGLVNCIRKEPNGLNLKCVLVDDYRAPKFNFGNEFYKSF
LDQGLAINVFKNGKWGSYRHLQLIQKYESMPRIDHCYANSLVRGDLSSMTWLYGPYNHGK
PDGEICRIQYASLNFRDVMLATGKLTAEVFGSGRLDQLCILGFEYAGVTESGRKVMGMVI
SGSLATHIKVDDTLLWDVPQGWTLQEAATIPVVYATVYSAFFLTTKIEKGKSILIHAGSG
GVGLAAIRVAFAYGLEVYTTVSTEEKKNFLLNEFPKLKRENIGNSRDTSFEDMIAVRTKG
KGVDYVLNSLAEEKLHASIRCLGKGGVFLEIGKFDLANDTKIGLGAFLKQLSFHSILVDL
LFTGTHEDKLILQRILERDLEKGIIKPLKTTVFEAHEVVEAFRYLASGKHVGKVMLKIRE
DPYDDATLPITAIPRTYCYPYYSYIIPGGLGGFGLELADWLVLRGCKKLVLSSSRGVTKQ
YQAFRIRIWESYGVEVTVNTSDISSKAGCEKLIRDAMKLGPVGGIFNLAVILRDSIFENQ
DVTKFVECMAPKAIATKYLDEISRILCPELQYFVIFSSVSCGRGNAGQSNYGMANSVMEK
IMEQRHNLGLPAKAIQWGAVGEVGLVADMQEDMLDMEIGGTLQQRISSCLEELDALLAAE
QPLVSSMVVAEKKVKVGAGASVIDAVMSIMSIRDMKSVSMDATLSEMGMDSLMAVEIRQM
LEREYELFLSPQDLRSLTFMKLQELTTAQEGVENETAKIKFATEDVPAGVELMLRNIGDE
KTSSQTILRMTSQDNSVKHNSCVLLIPGIEGVAGTLWRNVANGLTLPTYMLQLMSTKNLT
QIQDVAKAVFNNIVTDVFNKDRDHFYVVGYSFGSLVALEVVKLLEGMGKKGKLVLIDGAP
TFLKKMVVDQMPVHSDEAVQSVMLAGIIRTIFPEEKLDLRKIMAENPSFEERVDEMIELS
KGQYLYSTDYLRDMAFCLFQRLKMVIDYKFDYKNIIKTSITLVRPTEISTVDVDEDYGLQ
KITKGDVNIKYVEGNHLTMLESPKLIQIINQLDPALESNKSFMKHNMI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
30 g10357.t1 CDD cd00833 PKS 24 425 9.26698E-149
31 g10357.t1 CDD cd05195 enoyl_red 1444 1736 1.53883E-99
29 g10357.t1 CDD cd08954 KR_1_FAS_SDR_x 1734 1990 3.40877E-62
21 g10357.t1 Gene3D G3DSA:3.40.47.10 - 24 427 1.9E-136
26 g10357.t1 Gene3D G3DSA:3.30.70.3290 - 443 874 1.3E-171
24 g10357.t1 Gene3D G3DSA:3.40.366.10 - 519 837 1.3E-171
27 g10357.t1 Gene3D G3DSA:3.10.129.110 - 888 1129 2.7E-74
20 g10357.t1 Gene3D G3DSA:3.40.50.720 - 1311 1989 6.3E-279
23 g10357.t1 Gene3D G3DSA:3.90.180.10 - 1405 1756 6.3E-279
22 g10357.t1 Gene3D G3DSA:1.10.1200.10 - 1997 2080 1.2E-19
25 g10357.t1 Gene3D G3DSA:3.40.50.1820 - 2123 2364 1.0E-47
28 g10357.t1 Gene3D G3DSA:1.10.1470.20 Fatty acid synthase; domain 2 2223 2308 1.0E-47
10 g10357.t1 PANTHER PTHR43775 FATTY ACID SYNTHASE 10 2373 0.0
11 g10357.t1 PANTHER PTHR43775:SF23 FATTY ACID SYNTHASE 3 10 2373 0.0
4 g10357.t1 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 24 260 3.3E-62
1 g10357.t1 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 265 382 1.3E-33
9 g10357.t1 Pfam PF16197 Ketoacyl-synthetase C-terminal extension 386 496 9.8E-24
7 g10357.t1 Pfam PF00698 Acyl transferase domain 524 833 3.7E-60
3 g10357.t1 Pfam PF14765 Polyketide synthase dehydratase 887 1083 2.9E-13
8 g10357.t1 Pfam PF13602 Zinc-binding dehydrogenase 1604 1735 1.2E-14
2 g10357.t1 Pfam PF08659 KR domain 1763 1941 6.6E-41
5 g10357.t1 Pfam PF00550 Phosphopantetheine attachment site 2008 2057 1.7E-6
6 g10357.t1 Pfam PF00975 Thioesterase domain 2125 2371 4.2E-7
32 g10357.t1 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 174 190 -
33 g10357.t1 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2026 2041 -
39 g10357.t1 ProSiteProfiles PS50075 Carrier protein (CP) domain profile. 1996 2076 11.23
37 g10357.t1 SMART SM00825 Beta-ketoacyl synthase 26 431 1.3E-105
35 g10357.t1 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 526 819 2.4E-24
34 g10357.t1 SMART SM00829 PKS_ER_names_mod 1424 1736 1.8E-118
38 g10357.t1 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 1762 1943 7.1E-21
36 g10357.t1 SMART SM00823 Phosphopantetheine attachment site 1999 2057 4.9E-5
14 g10357.t1 SUPERFAMILY SSF53901 Thiolase-like 20 428 7.37E-68
13 g10357.t1 SUPERFAMILY SSF52151 FabD/lysophospholipase-like 523 809 1.44E-34
19 g10357.t1 SUPERFAMILY SSF55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase 649 708 2.88E-8
17 g10357.t1 SUPERFAMILY SSF50129 GroES-like 1434 1556 8.93E-17
15 g10357.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1521 1678 1.41E-32
16 g10357.t1 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 1764 1961 4.57E-27
18 g10357.t1 SUPERFAMILY SSF47336 ACP-like 2002 2062 3.4E-9
12 g10357.t1 SUPERFAMILY SSF53474 alpha/beta-Hydrolases 2096 2374 3.88E-33

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031177 phosphopantetheine binding MF
GO:0016746 acyltransferase activity MF
GO:0009058 biosynthetic process BP
GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity MF
GO:0006633 fatty acid biosynthetic process BP
GO:0016740 transferase activity MF
GO:0004312 fatty acid synthase activity MF
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values