General information for g10357.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Fatty acid synthase.
Parent gene
- The parent gene g10357 is located on chr_1: 9091483..9098598 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10357 | g10357.t2 | TSS | g10357.t2 | 9090730 | 9090730 |
| chr_1 | g10357 | g10357.t2 | isoform | g10357.t2 | 9091483 | 9092575 |
| chr_1 | g10357 | g10357.t2 | exon | g10357.t2.exon1 | 9091483 | 9091485 |
| chr_1 | g10357 | g10357.t2 | exon | g10357.t2.exon2 | 9091544 | 9091637 |
| chr_1 | g10357 | g10357.t2 | cds | g10357.t2.CDS1 | 9091561 | 9091637 |
| chr_1 | g10357 | g10357.t2 | exon | g10357.t2.exon3 | 9091693 | 9091989 |
| chr_1 | g10357 | g10357.t2 | cds | g10357.t2.CDS2 | 9091693 | 9091989 |
| chr_1 | g10357 | g10357.t2 | exon | g10357.t2.exon4 | 9092121 | 9092575 |
| chr_1 | g10357 | g10357.t2 | cds | g10357.t2.CDS3 | 9092121 | 9092241 |
| chr_1 | g10357 | g10357.t2 | TTS | g10357.t2 | NA | NA |
Sequences
>g10357.t2 Gene=g10357 Length=849
GCGCATTCAATGCAATTCGAATGGGTGAAATTGATGCTGCATTGGTTGGTGGATCAAATT
TGTTGCTTCATCCATATGTTACACTTCAATTTGCACGTTTGGGTGTTCTTGCACCAAGTG
GCTATTGTCGTCCGTTTGATAAAGACGGAAGTGGATATACAAGGTCTGAAGCAGTTTGTG
TGATGTATCTTCAAAAAGCAAAAAATGCTAAACGAGTTTATGCAAATCTTCTATATTCAA
AGACAAATTGTGATGGGTATAAGGAAGAGGGCATAACTTATCCTAGTGGCAAAATGCAAA
TGAAATTACTTAAAGAATTTTATGATGATCTAGAACTTCCAGCTAATAAAGTTGACTATG
TTGAAGCACATAGCACAGGCACAATTGTGGGTAAGTTAAAGCGCTTGACACTGTTTTCTG
CACGAGTCGTAACAAACCGTTACCAGTTGGATCAGTTAAATCAAATATGGGACATTCTGA
AAGTACAGCTGGTGCGTGCTCGATTGCAAAAATGATTTTTGCATTTGAGACTCAAAAAAT
TGCACCAAATATAAATTTTGAAGTCATTCGTCCTGGTCTTGAGTCATTAGAAGCTGGTAG
ATTGCGTGTTGTAGCAGAAACTGAAGAACTTTCAGGTCCACTTATCAGCGTTAACTCTTT
TGGATTCGGCGGCGGAAATGCACACGCTTTGTTCAGACAACATTCAAAAGTGAAGGTCAA
TCAAGGCATTCCAAATGATGATATTCCTCGATTGATTTTATGGTCAAGTAGAACAGAAGA
AGGTGTGAATTCAATCCTTGATAGTGTAATGAAACAACCACTTGATGCTGAATATGTTGG
ACTATTACA
>g10357.t2 Gene=g10357 Length=164
MGEIDAALVGGSNLLLHPYVTLQFARLGVLAPSGYCRPFDKDGSGYTRSEAVCVMYLQKA
KNAKRVYANLLYSKTNCDGYKEEGITYPSGKMQMKLLKEFYDDLELPANKVDYVEAHSTG
TIVGKLKRLTLFSARVVTNRYQLDQLNQIWDILKVQLVRARLQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10357.t2 | Gene3D | G3DSA:3.40.47.10 | - | 1 | 135 | 0.0e+00 |
| 3 | g10357.t2 | PANTHER | PTHR43775 | FATTY ACID SYNTHASE | 2 | 129 | 0.0e+00 |
| 4 | g10357.t2 | PANTHER | PTHR43775:SF23 | FATTY ACID SYNTHASE 3 | 2 | 129 | 0.0e+00 |
| 2 | g10357.t2 | Pfam | PF00109 | Beta-ketoacyl synthase, N-terminal domain | 2 | 62 | 0.0e+00 |
| 1 | g10357.t2 | Pfam | PF02801 | Beta-ketoacyl synthase, C-terminal domain | 67 | 124 | 0.0e+00 |
| 6 | g10357.t2 | SMART | SM00825 | Beta-ketoacyl synthase | 1 | 151 | 1.3e-05 |
| 5 | g10357.t2 | SUPERFAMILY | SSF53901 | Thiolase-like | 30 | 126 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016746 | acyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed