General information for g10361.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10361 is located on chr_1: 9106070..9109573 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10361 | g10361.t3 | TSS | g10361.t3 | 9105990 | 9105990 |
| chr_1 | g10361 | g10361.t3 | isoform | g10361.t3 | 9106070 | 9107181 |
| chr_1 | g10361 | g10361.t3 | exon | g10361.t3.exon1 | 9106070 | 9107181 |
| chr_1 | g10361 | g10361.t3 | cds | g10361.t3.CDS1 | 9106884 | 9107180 |
| chr_1 | g10361 | g10361.t3 | TTS | g10361.t3 | 9107188 | 9107188 |
Sequences
>g10361.t3 Gene=g10361 Length=1112
ATGAATTTAGGACCGAAAAAAGATGGAAGTCCAAATGTAGAGTTTTTTACATCACCTGAA
TCACTTCAGGGATTCGAGACTGTTCGATTATGGCTACAAAAACATCATAAAAAAGTAAGT
AAAGATACAAGAAAATGAAAAAATGGCTGAAATAATATGAAAAAGTGATTAACACCATAA
ATTTGTCATTCTCAGTATATTCAGGCTGATCCACCAACAAAAGAGAGCCTTGCACAGCTC
ATTATTCAATTAATACAGTATCAAGAAACAAAACTTGGTAAAAATTCTCAAGATACATCG
ATGACAACAAGACTTCCGGTAAATAATACAGGCGGTTAAAAAAATTTATTGTAAAAGTTA
ATTTATGAACATTTTAGATGAGATTTTTTCATGATTTCAAACCTGGTGGAGCACTTTGTG
TCATTTTATCAACAATGTATCGCTTCAAGAGTGATCAACGTTGGAGAAAATTTGATTTCA
CTGTTAGCAAAGTAAGTTAAATTTTAAAAATTTTTTTAATAATATTTAAATTATGTTCCA
ATCATTTTAGACATCATCCAAAAAAGATCCAAATCTTCAATTGCTTGTTGAAATTGAATC
AAGTTTGATTGACGCTGAAGTTTTTAGACTTCCAACAATTTACATTAGACCAGAAGTTGA
TCGACAACTTGCAGCAAGAATACGTGAAATTATTACAAATCATCAAGCTGAAATAACAGA
AGATGAAGAAGAAGCGACACATATTGTGTATCCAGAAGTTGATCCTCTGCCTGAAGAATA
TGCGAGACCGCTATTTAAACGTGACAAATATGTCATGCTGCATTGGTATTATTTTCCAGA
ATCATACGATTCTTGGGTTCCAAATAATTTCGATTTACCTGACAATGTTCCCGATTGTCC
TGCATCACCTGCCGATCATTGGCGTGTTTCTGCTCAGTGGGTTCGTGATCTTGATCAATA
TAATGAATGGATGTCAGAAGAAGATTATGAAGTTGATGAACAAGGACGTAAGAAAGTTCA
TAAATTAAGAATTTCTGTTGAAGATCTTATGTCAGCTGATGGTGATAAGTCAAAGAAACA
AATGGCATCAAAAGGTAAACGTAAGCGCTCAC
>g10361.t3 Gene=g10361 Length=99
MLHWYYFPESYDSWVPNNFDLPDNVPDCPASPADHWRVSAQWVRDLDQYNEWMSEEDYEV
DEQGRKKVHKLRISVEDLMSADGDKSKKQMASKGKRKRS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10361.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 99 | - |
| 1 | g10361.t3 | Pfam | PF16496 | SWIRM-associated domain at the N-terminal | 1 | 99 | 1.5E-38 |
| 2 | g10361.t3 | SUPERFAMILY | SSF52113 | BRCT domain | 25 | 67 | 8.83E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
