Gene loci information

Transcript annotation

  • This transcript has been annotated as Zinc transporter ZIP9.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10375 g10375.t2 TTS g10375.t2 9320462 9320462
chr_1 g10375 g10375.t2 isoform g10375.t2 9320594 9321399
chr_1 g10375 g10375.t2 exon g10375.t2.exon1 9320594 9321399
chr_1 g10375 g10375.t2 cds g10375.t2.CDS1 9320594 9321394
chr_1 g10375 g10375.t2 TSS g10375.t2 9321801 9321801

Sequences

>g10375.t2 Gene=g10375 Length=806
TTAAGATGGTATCAATACTTGGTGCGGGACTATTAGTTGGTACAGCTTTAATTGTAATCA
TTCCCGAGGGTGTTAGATCACTTTATGCTAATGAAAAAAGTGGAGAGCATAGTGAAACTG
CGACTGAACAGAATCATCATCATGAAGAACCGGAAGATTTTTCTAAAACAATTGGATTAT
CATTGGTGCTAGGTTTTGTTTTCATGATGCTTGTTGAGCAGATATCTTCACGTCGAACAC
ATAGTCCAGATGGAAAAGAAATTAAAAGGAATCCTACAGCCACAATTGGCTTAGTAGTGC
ATGCAGCTGCTGATGGAATCGCATTAGGAGCGGCTGCTAAAACAAGCCATCAAGATGTAG
AAATGATTGTTTTTCTTGCAATCATGTTACACAAAGCACCAGCTGCATTTGGTTTAGTTA
GTTTTCTTCTACATGAAGGCATAGATCGGCAACGAATAAGAAAACATCTAGGAATATTTT
CTCTATCTGCTCCTTTACTTACATTAGTTACCTATTTTGGAATTGCTCAAGAGCAAAAAG
AGACATTGAATTCAGTAAATGCAACTGCCGTTGCTATGCTATTTTCAGCTGGAACTTTTC
TGTACGTCGCAACTGTACACGTATTACCCGAATTGACAAATCAACAACCACATTTTCATC
ATGCCTCTTCTGGTCCTCATTATAGTCATCTTGAGCAAGGAACTACAAGTTCAAAGCCAC
AAAGTGGACTTACCAATATTGAATTATTAACACTTATTTCTGGGGCATTGTTACCACTTT
TTCTTACATTAGGACATCATCATTAG

>g10375.t2 Gene=g10375 Length=266
MVSILGAGLLVGTALIVIIPEGVRSLYANEKSGEHSETATEQNHHHEEPEDFSKTIGLSL
VLGFVFMMLVEQISSRRTHSPDGKEIKRNPTATIGLVVHAAADGIALGAAAKTSHQDVEM
IVFLAIMLHKAPAAFGLVSFLLHEGIDRQRIRKHLGIFSLSAPLLTLVTYFGIAQEQKET
LNSVNATAVAMLFSAGTFLYVATVHVLPELTNQQPHFHHASSGPHYSHLEQGTTSSKPQS
GLTNIELLTLISGALLPLFLTLGHHH

Protein features from InterProScan

Transcript Database ID Name Start End E.value
10 g10375.t2 MobiDBLite mobidb-lite consensus disorder prediction 30 52 -
2 g10375.t2 PANTHER PTHR16133 SOLUTE CARRIER FAMILY 39 ZINC TRANSPORTER , MEMBER 9-RELATED 1 266 1.2E-89
1 g10375.t2 Pfam PF02535 ZIP Zinc transporter 92 260 2.2E-26
18 g10375.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 28 -
19 g10375.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 3 -
20 g10375.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 4 19 -
27 g10375.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 20 28 -
16 g10375.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 29 51 -
21 g10375.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 52 70 -
11 g10375.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 71 90 -
24 g10375.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 109 -
15 g10375.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 110 120 -
23 g10375.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 121 143 -
12 g10375.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 144 154 -
25 g10375.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 155 174 -
17 g10375.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 175 185 -
26 g10375.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 186 207 -
13 g10375.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 208 244 -
22 g10375.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 245 263 -
14 g10375.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 264 266 -
9 g10375.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 2 19 -
5 g10375.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 52 70 -
3 g10375.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 91 110 -
7 g10375.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 120 142 -
8 g10375.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 155 174 -
4 g10375.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 184 206 -
6 g10375.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 241 263 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0046873 metal ion transmembrane transporter activity MF
GO:0030001 metal ion transport BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values