General information for g10377.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative RalA-binding protein 1.
Parent gene
- The parent gene g10377 is located on chr_1: 9324430..9325445 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10377 | g10377.t1 | isoform | g10377.t1 | 9324430 | 9325445 |
| chr_1 | g10377 | g10377.t1 | exon | g10377.t1.exon1 | 9324430 | 9324735 |
| chr_1 | g10377 | g10377.t1 | cds | g10377.t1.CDS1 | 9324430 | 9324735 |
| chr_1 | g10377 | g10377.t1 | exon | g10377.t1.exon2 | 9324805 | 9325080 |
| chr_1 | g10377 | g10377.t1 | cds | g10377.t1.CDS2 | 9324805 | 9325080 |
| chr_1 | g10377 | g10377.t1 | exon | g10377.t1.exon3 | 9325136 | 9325331 |
| chr_1 | g10377 | g10377.t1 | cds | g10377.t1.CDS3 | 9325136 | 9325331 |
| chr_1 | g10377 | g10377.t1 | exon | g10377.t1.exon4 | 9325396 | 9325445 |
| chr_1 | g10377 | g10377.t1 | cds | g10377.t1.CDS4 | 9325396 | 9325445 |
| chr_1 | g10377 | g10377.t1 | TSS | g10377.t1 | 9325592 | 9325592 |
| chr_1 | g10377 | g10377.t1 | TTS | g10377.t1 | NA | NA |
Sequences
>g10377.t1 Gene=g10377 Length=828
ATGCAACGAAAGCGTTCATGGAGAATTCCGAAATTATTCAGACAATGCGTATATGTGCCG
CCACAAAATTCTGCTACTTTAAATAAAAGTCCAAGCCTGCCTGAAACAGTTGACGACATA
CAACTTGAGTTACAAAAACAAGAAAATGTTTTACATCAAATTCATTCTGAAATGCATGCG
GGTACAGTTTCTAAAAAACGAGAAGATGAACTTTGGGAAACTCAGCGAAATATCACACAA
TTGAAGCGTAAACTTCGGACATTTGAGAAGAAAAATATAAATTTGATAGAGAAAAGGGCA
GAAGATTTAAGTGACGAAAACATTGATTTTACATTGCAACGACCTGAAAATGATAGCGGT
GAGCAACGGAAAAATAATTTTGCCCCAGTAGCATGTGATGTGGTTGATAAATTAGAAAAT
ACCGATGATACCAAAATTTGCATAATGGAAAATGGAATGTACATGCTTCCTGACGACCAT
CCGGACTATGAAACTCTCATCAAACTGCAGCTTGAAAATCAGGAACTCCTAAATTTCAAA
CGGCAACTACAAGAACGTATAAATTATGAACGTGCAGAATGCGTGCGGTTAAAAAAACTT
TTAGATAATCAAAATTCGTTGAGAATCGTAAATTCACCAGATGAAGTAATGGTGCCAGAA
AATTCTGATATAGATTCTGAATATCAAGAGAAACTCATCGAGTATTTTATGAAGGAGAAT
TCCCTTCTCGATCAAAAAAGAATTCTTCTAACAAAAGAAATATTTAATGAAAAAATTTTA
CTGATTCAGCTGCAAGTTGATCTTGCAATGAAACAGTTTGTAAATTAA
>g10377.t1 Gene=g10377 Length=275
MQRKRSWRIPKLFRQCVYVPPQNSATLNKSPSLPETVDDIQLELQKQENVLHQIHSEMHA
GTVSKKREDELWETQRNITQLKRKLRTFEKKNINLIEKRAEDLSDENIDFTLQRPENDSG
EQRKNNFAPVACDVVDKLENTDDTKICIMENGMYMLPDDHPDYETLIKLQLENQELLNFK
RQLQERINYERAECVRLKKLLDNQNSLRIVNSPDEVMVPENSDIDSEYQEKLIEYFMKEN
SLLDQKRILLTKEIFNEKILLIQLQVDLAMKQFVN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10377.t1 | Coils | Coil | Coil | 37 | 57 | - |
| 4 | g10377.t1 | Coils | Coil | Coil | 71 | 106 | - |
| 5 | g10377.t1 | Coils | Coil | Coil | 166 | 186 | - |
| 2 | g10377.t1 | Gene3D | G3DSA:1.20.58.90 | - | 24 | 87 | 1.1E-21 |
| 1 | g10377.t1 | PANTHER | PTHR12783 | RALA BINDING PROTEIN 1 RALBP1 | 17 | 272 | 1.4E-23 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031267 | small GTPase binding | MF |
| GO:0007264 | small GTPase mediated signal transduction | BP |
| GO:0005096 | GTPase activator activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
