General information for g10380.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome non-ATPase regulatory subunit 1.
Parent gene
- The parent gene g10380 is located on chr_1: 9331680..9338812 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10380 | g10380.t2 | TSS | g10380.t2 | 9330401 | 9330401 |
| chr_1 | g10380 | g10380.t2 | isoform | g10380.t2 | 9330528 | 9331680 |
| chr_1 | g10380 | g10380.t2 | exon | g10380.t2.exon1 | 9330528 | 9330552 |
| chr_1 | g10380 | g10380.t2 | cds | g10380.t2.CDS1 | 9330528 | 9330552 |
| chr_1 | g10380 | g10380.t2 | exon | g10380.t2.exon2 | 9330649 | 9330766 |
| chr_1 | g10380 | g10380.t2 | cds | g10380.t2.CDS2 | 9330649 | 9330766 |
| chr_1 | g10380 | g10380.t2 | exon | g10380.t2.exon3 | 9330839 | 9331680 |
| chr_1 | g10380 | g10380.t2 | cds | g10380.t2.CDS3 | 9330839 | 9331679 |
| chr_1 | g10380 | g10380.t2 | TTS | g10380.t2 | NA | NA |
Sequences
>g10380.t2 Gene=g10380 Length=985
ATGATTATGAATATAACATCAGCAGCCGGAATTATATCCTTGCTCGACGAGCCAATGCCA
GAGCTTAAGATTTTTGCTCTAAAGAAACTTGATAATATCGTTGATGAATTTTGGCCGGAA
ATTTCAGAAGCTGTCGAAAAACTTGAAATTCTTCATGAAGATAAACAGTTTTCTCAACAT
GAGTTGGCAGCATTAGTTGCATCAAAGGTTTATTATCATCTTGGTGCATTCGAAGATTCT
TTGACTTATGCATTAGGAGCCGGAAATCTTTTCGATGTGAATGCTCGAAATGAGTACGTC
GATACAATCATTGCAAAGTGTATCGATTTTTATACGCAACAACGAGTTGCTATTTTTGAG
AATTCAAAGAATGAAAAACCGATTGATCCACGATTGGAAGCTATTGTGAACCGTATGATT
CAGCGTTGTCTTGATGATGGTCAATATCGTCAAGCTCTCGGTATTGCTCTTGAAACACGT
CGTATGGATATTGTAGAAGCATCGATAATGAAATCTGATGATGTTTCTGGTATGCTTGCT
TATGCATTTCAAGTTACAATGAGTCTAATTCAAAATCGAGGATTTCGCAATACTGTGTTA
CGCTGCCTTGTTAGCCTCTATCGAAATCTTGGGATTCTTGATTATGTCAATATGGTTCAA
TGTCTCATATTTTTGGAGGATCCAATGGAAGTTGCACAACTGTTAGATAATCTTACAAAA
GGCGGAGACCAGCTTGTGTTGATGGCATATCAAATAGCATTTGATTTATACGAGTCAGCG
ACTCAAGATTTTTTGGGACAAGTTTTACAAGCACTGAAAGCGACTGCTCCTATTCCATCT
GCTCTCGTATCGAATTTGAAACCGCAGGGCGTAAAAGAACCATCAAAGGACGATAAATCA
TCAAAGTCTGATGCAGATGTGGAAATGACTGGGGCTGTTCGCTCGTTAGAAAGCCTAAAC
GACGCAGAGAAAATTCATCAAAAGA
>g10380.t2 Gene=g10380 Length=328
MIMNITSAAGIISLLDEPMPELKIFALKKLDNIVDEFWPEISEAVEKLEILHEDKQFSQH
ELAALVASKVYYHLGAFEDSLTYALGAGNLFDVNARNEYVDTIIAKCIDFYTQQRVAIFE
NSKNEKPIDPRLEAIVNRMIQRCLDDGQYRQALGIALETRRMDIVEASIMKSDDVSGMLA
YAFQVTMSLIQNRGFRNTVLRCLVSLYRNLGILDYVNMVQCLIFLEDPMEVAQLLDNLTK
GGDQLVLMAYQIAFDLYESATQDFLGQVLQALKATAPIPSALVSNLKPQGVKEPSKDDKS
SKSDADVEMTGAVRSLESLNDAEKIHQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g10380.t2 | Coils | Coil | Coil | 322 | 328 | - |
| 4 | g10380.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 307 | - |
| 3 | g10380.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 305 | - |
| 1 | g10380.t2 | PANTHER | PTHR10943:SF13 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 1 HOMOLOG | 5 | 316 | 1.9E-79 |
| 2 | g10380.t2 | PANTHER | PTHR10943 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT | 5 | 316 | 1.9E-79 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed