General information for g10380.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome non-ATPase regulatory subunit 1.
Parent gene
- The parent gene g10380 is located on chr_1: 9331680..9338812 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10380 | g10380.t4 | TSS | g10380.t4 | 9330401 | 9330401 |
| chr_1 | g10380 | g10380.t4 | isoform | g10380.t4 | 9330528 | 9331680 |
| chr_1 | g10380 | g10380.t4 | exon | g10380.t4.exon1 | 9330528 | 9330766 |
| chr_1 | g10380 | g10380.t4 | cds | g10380.t4.CDS1 | 9330678 | 9330766 |
| chr_1 | g10380 | g10380.t4 | exon | g10380.t4.exon2 | 9330839 | 9331680 |
| chr_1 | g10380 | g10380.t4 | cds | g10380.t4.CDS2 | 9330839 | 9331679 |
| chr_1 | g10380 | g10380.t4 | TTS | g10380.t4 | NA | NA |
Sequences
>g10380.t4 Gene=g10380 Length=1081
ATGATTATGAATATAACATCAGCAGGTATGTATTTGCCTCAAAATTCAAATGAAATTTAA
TCTTTTGCAAGTCATTGTAACCTAGAATGAACAAATCTAATAATTTTGCAATATTTCACA
GCCGGAATTATATCCTTGCTCGACGAGCCAATGCCAGAGCTTAAGATTTTTGCTCTAAAG
AAACTTGATAATATCGTTGATGAATTTTGGCCGGAAATTTCAGAAGCTGTCGAAAAACTT
GAAATTCTTCATGAAGATAAACAGTTTTCTCAACATGAGTTGGCAGCATTAGTTGCATCA
AAGGTTTATTATCATCTTGGTGCATTCGAAGATTCTTTGACTTATGCATTAGGAGCCGGA
AATCTTTTCGATGTGAATGCTCGAAATGAGTACGTCGATACAATCATTGCAAAGTGTATC
GATTTTTATACGCAACAACGAGTTGCTATTTTTGAGAATTCAAAGAATGAAAAACCGATT
GATCCACGATTGGAAGCTATTGTGAACCGTATGATTCAGCGTTGTCTTGATGATGGTCAA
TATCGTCAAGCTCTCGGTATTGCTCTTGAAACACGTCGTATGGATATTGTAGAAGCATCG
ATAATGAAATCTGATGATGTTTCTGGTATGCTTGCTTATGCATTTCAAGTTACAATGAGT
CTAATTCAAAATCGAGGATTTCGCAATACTGTGTTACGCTGCCTTGTTAGCCTCTATCGA
AATCTTGGGATTCTTGATTATGTCAATATGGTTCAATGTCTCATATTTTTGGAGGATCCA
ATGGAAGTTGCACAACTGTTAGATAATCTTACAAAAGGCGGAGACCAGCTTGTGTTGATG
GCATATCAAATAGCATTTGATTTATACGAGTCAGCGACTCAAGATTTTTTGGGACAAGTT
TTACAAGCACTGAAAGCGACTGCTCCTATTCCATCTGCTCTCGTATCGAATTTGAAACCG
CAGGGCGTAAAAGAACCATCAAAGGACGATAAATCATCAAAGTCTGATGCAGATGTGGAA
ATGACTGGGGCTGTTCGCTCGTTAGAAAGCCTAAACGACGCAGAGAAAATTCATCAAAAG
A
>g10380.t4 Gene=g10380 Length=310
MPELKIFALKKLDNIVDEFWPEISEAVEKLEILHEDKQFSQHELAALVASKVYYHLGAFE
DSLTYALGAGNLFDVNARNEYVDTIIAKCIDFYTQQRVAIFENSKNEKPIDPRLEAIVNR
MIQRCLDDGQYRQALGIALETRRMDIVEASIMKSDDVSGMLAYAFQVTMSLIQNRGFRNT
VLRCLVSLYRNLGILDYVNMVQCLIFLEDPMEVAQLLDNLTKGGDQLVLMAYQIAFDLYE
SATQDFLGQVLQALKATAPIPSALVSNLKPQGVKEPSKDDKSSKSDADVEMTGAVRSLES
LNDAEKIHQK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g10380.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 289 | - |
| 4 | g10380.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 287 | - |
| 1 | g10380.t4 | PANTHER | PTHR10943:SF13 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 1 HOMOLOG | 2 | 299 | 7.1E-75 |
| 2 | g10380.t4 | PANTHER | PTHR10943 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT | 2 | 299 | 7.1E-75 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
