General information for g10380.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome non-ATPase regulatory subunit 1.
Parent gene
- The parent gene g10380 is located on chr_1: 9331680..9338812 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10380 | g10380.t6 | isoform | g10380.t6 | 9331680 | 9333338 |
| chr_1 | g10380 | g10380.t6 | exon | g10380.t6.exon1 | 9331680 | 9332318 |
| chr_1 | g10380 | g10380.t6 | cds | g10380.t6.CDS1 | 9331845 | 9332318 |
| chr_1 | g10380 | g10380.t6 | exon | g10380.t6.exon2 | 9333052 | 9333090 |
| chr_1 | g10380 | g10380.t6 | cds | g10380.t6.CDS2 | 9333052 | 9333090 |
| chr_1 | g10380 | g10380.t6 | exon | g10380.t6.exon3 | 9333164 | 9333338 |
| chr_1 | g10380 | g10380.t6 | cds | g10380.t6.CDS3 | 9333164 | 9333319 |
| chr_1 | g10380 | g10380.t6 | TSS | g10380.t6 | NA | NA |
| chr_1 | g10380 | g10380.t6 | TTS | g10380.t6 | NA | NA |
Sequences
>g10380.t6 Gene=g10380 Length=853
AACATTGAAAAGTTGGCAAGCATTCTATCGGGTGAGGTTTCAATTGACTTGCAATTACAG
TTTTTGATTCGAAGCAATCATGCTGATTTGCAAATTTTGAGAGCAACCAAGGAGTCAGTT
CGAGTTTCGATCTGCCACACAGCAACTGTTATTGCAAACGCTTTTATGCACAGTGGCACA
ACAAGTGATCAATTTTTGAGAGATAATCTTGAATGGCTTGCTCGAGCAACAAACTGGGCA
AAATTAACAGCAACTGCTAGTTTGGGTGTTATTCATCGTGGACACGAAAATGAATCACTT
GCTCTTATGCAAAGCTACTTACCAAAAGAGTCAGGACCCAGTGGATATTCTGAAGGTGGT
GGACTTTATGCTCTTGGATTAATTCATGCAAACCATGGAGCAAACATTATTGATTATTTA
CTTCAGCAATTGAAGGATGCTCAAAATGAAAATGTTCGACATGGAGGTTGTTTGGGACTT
GGTCTTGCCGCAATGGGAACACATCGACAAGACGTTTACGAGCAACTCAAATTCAATTTA
TATCAAGATGATGCAGTGACTGGTGAAGCTGCAGGTATTGCTATGGGAATGGTGATGCTT
GGCTCTAAAAATGCAACTGCTATCGAAGATATGGTTTCGATAAGAAAACGAAAAGAAAAT
TCATATCACATTTTCACGCAACGTTTGAAAATAATAATACTTGCGATATATGTTGAGAAA
GAAAATGATGTTTATTATATGTATAAATTTAGAAGGGATATTGTAAATAATGATTCAAAT
GATTACGATAGACAATATAAATTGAAAAATTTATATTTACTTGTTAAAAATTAATATAAA
AAAATTAAAATAA
>g10380.t6 Gene=g10380 Length=222
MHSGTTSDQFLRDNLEWLARATNWAKLTATASLGVIHRGHENESLALMQSYLPKESGPSG
YSEGGGLYALGLIHANHGANIIDYLLQQLKDAQNENVRHGGCLGLGLAAMGTHRQDVYEQ
LKFNLYQDDAVTGEAAGIAMGMVMLGSKNATAIEDMVSIRKRKENSYHIFTQRLKIIILA
IYVEKENDVYYMYKFRRDIVNNDSNDYDRQYKLKNLYLLVKN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10380.t6 | Gene3D | G3DSA:1.25.10.10 | - | 1 | 195 | 0.0e+00 |
| 4 | g10380.t6 | PANTHER | PTHR10943:SF2 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 1 | 1 | 162 | 0.0e+00 |
| 5 | g10380.t6 | PANTHER | PTHR10943 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT | 1 | 162 | 0.0e+00 |
| 1 | g10380.t6 | Pfam | PF01851 | Proteasome/cyclosome repeat | 29 | 60 | 6.7e-05 |
| 3 | g10380.t6 | Pfam | PF01851 | Proteasome/cyclosome repeat | 65 | 96 | 1.0e-07 |
| 2 | g10380.t6 | Pfam | PF01851 | Proteasome/cyclosome repeat | 100 | 132 | 1.0e-05 |
| 6 | g10380.t6 | SUPERFAMILY | SSF48371 | ARM repeat | 8 | 159 | 2.0e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0030234 | enzyme regulator activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
