General information for g10382.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as 26S proteasome non-ATPase regulatory subunit 1.
Parent gene
- The parent gene g10382 is located on chr_1: 9347531..9348435 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10382 | g10382.t1 | isoform | g10382.t1 | 9347013 | 9348435 |
| chr_1 | g10382 | g10382.t1 | exon | g10382.t1.exon1 | 9347013 | 9347023 |
| chr_1 | g10382 | g10382.t1 | cds | g10382.t1.CDS1 | 9347013 | 9347023 |
| chr_1 | g10382 | g10382.t1 | exon | g10382.t1.exon2 | 9347224 | 9347309 |
| chr_1 | g10382 | g10382.t1 | cds | g10382.t1.CDS2 | 9347224 | 9347309 |
| chr_1 | g10382 | g10382.t1 | exon | g10382.t1.exon3 | 9347368 | 9347465 |
| chr_1 | g10382 | g10382.t1 | cds | g10382.t1.CDS3 | 9347368 | 9347465 |
| chr_1 | g10382 | g10382.t1 | exon | g10382.t1.exon4 | 9347533 | 9348435 |
| chr_1 | g10382 | g10382.t1 | cds | g10382.t1.CDS4 | 9347533 | 9348435 |
| chr_1 | g10382 | g10382.t1 | TTS | g10382.t1 | 9348528 | 9348528 |
| chr_1 | g10382 | g10382.t1 | TSS | g10382.t1 | NA | NA |
Sequences
>g10382.t1 Gene=g10382 Length=1098
ATGAAAGAAATAAACCCAGAGCAATGTCCATCAGTCGTTTCGCTTCTTGCTGAGTCTTAC
AATCCGCATGTACGTTATGGAGCTGCTATGGCATTGGGAATTGCTTGTGCTGGTACTGGT
TTGCGTGAAGCAATTGCATTGTTAGAACCATTGGCCAAATTTGATCCAGTTAATTTTGTT
CGCCAGGGTGCTTTGATTGCATCTGCCATGATTCTCATTCAACATACGGATCAAACTTGT
CCAAAAGTGACATTCTTCCGACAACTTTATTCGCAAGTTATTAGCAGCAAGCATGAGGAC
ACAATGGCTAAATTCGGTGCTATTTTAGCACAAGGAATTATTGATGGTGGTGGTCGTAAT
GCAACATTGGGCTTGCAATCACGTACTGGTCATACTAATTTGCAAGCTGTCGTCGGTACT
TTAGTTTTCACTCAATATTGGTACTGGTTTCCGTTAGCTCATTGTTTATCGCTTGCATTC
ACACCAACCTGCATCATTGCACTGAATTCAGACTTGAAAATGCCAAAAATCGAATTTAAA
TCTTCTGCACGTCCTTCTTTGTATGCTTATCCAGCACCATTGGAAGAAAAGAAGCGAGAA
GAACGTGAAAAAGTCACAACTGCTATCTTATCAATTGCTGCGCGTCAAAAACGTCGTGAA
GGTGAAAAAAAGAAAGACGATGGAAAAATGGAAGTTGATGAGGAAGTAAAAGATGATAAG
GAAGATGCTAAAAAATCAGCTTCACCATCTGACAAGAAAGACAAGAAGTCTAAAGATGAA
AAGAGTGAAAAGACAGACGATGGAAATTCTACTGCTGTGACTGCTACGAAGGAACGAAAA
GAACCAGAACCTACATTTGAAATGCTCAGCAATCCAGCACGTGTTTTACGTCAACAATTG
AAAGTGATTAGTATTGCAGAAGGAACATCATATCAACCAGTAAAAGATGTCACAATCGGA
GGAATAATAATGATGCAGTACACATCACAAAATGAACAAGTATTGGTAGAACCCGTTGCA
GCATATGGACCAAAATCTACTGATGATAATGCAAAGGAACCAGATGCACCTGAACCATTT
GAGTATATTGAAGATTAA
>g10382.t1 Gene=g10382 Length=365
MKEINPEQCPSVVSLLAESYNPHVRYGAAMALGIACAGTGLREAIALLEPLAKFDPVNFV
RQGALIASAMILIQHTDQTCPKVTFFRQLYSQVISSKHEDTMAKFGAILAQGIIDGGGRN
ATLGLQSRTGHTNLQAVVGTLVFTQYWYWFPLAHCLSLAFTPTCIIALNSDLKMPKIEFK
SSARPSLYAYPAPLEEKKREEREKVTTAILSIAARQKRREGEKKKDDGKMEVDEEVKDDK
EDAKKSASPSDKKDKKSKDEKSEKTDDGNSTAVTATKERKEPEPTFEMLSNPARVLRQQL
KVISIAEGTSYQPVKDVTIGGIIMMQYTSQNEQVLVEPVAAYGPKSTDDNAKEPDAPEPF
EYIED
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g10382.t1 | Gene3D | G3DSA:1.25.10.10 | - | 2 | 163 | 3.0E-67 |
| 7 | g10382.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 287 | - |
| 6 | g10382.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 285 | - |
| 8 | g10382.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 365 | - |
| 3 | g10382.t1 | PANTHER | PTHR10943:SF2 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 1 | 5 | 333 | 2.7E-130 |
| 4 | g10382.t1 | PANTHER | PTHR10943 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT | 5 | 333 | 2.7E-130 |
| 1 | g10382.t1 | Pfam | PF01851 | Proteasome/cyclosome repeat | 27 | 62 | 9.8E-9 |
| 2 | g10382.t1 | Pfam | PF18004 | 26S proteasome regulatory subunit RPN2 C-terminal domain | 163 | 333 | 2.7E-49 |
| 11 | g10382.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 145 | - |
| 12 | g10382.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 146 | 168 | - |
| 10 | g10382.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 169 | 365 | - |
| 5 | g10382.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 6 | 114 | 7.68E-12 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0030234 | enzyme regulator activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
