General information for g10402.t10
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Guanine nucleotide-binding protein subunit beta-1.
Parent gene
- The parent gene g10402 is located on chr_1: 9567301..9568734 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10402 | g10402.t10 | TTS | g10402.t10 | 9561301 | 9561301 |
| chr_1 | g10402 | g10402.t10 | isoform | g10402.t10 | 9561446 | 9564971 |
| chr_1 | g10402 | g10402.t10 | exon | g10402.t10.exon1 | 9561446 | 9561552 |
| chr_1 | g10402 | g10402.t10 | cds | g10402.t10.CDS1 | 9561446 | 9561552 |
| chr_1 | g10402 | g10402.t10 | exon | g10402.t10.exon2 | 9561621 | 9561837 |
| chr_1 | g10402 | g10402.t10 | cds | g10402.t10.CDS2 | 9561621 | 9561837 |
| chr_1 | g10402 | g10402.t10 | exon | g10402.t10.exon3 | 9561900 | 9562126 |
| chr_1 | g10402 | g10402.t10 | cds | g10402.t10.CDS3 | 9561900 | 9562109 |
| chr_1 | g10402 | g10402.t10 | exon | g10402.t10.exon4 | 9562205 | 9562405 |
| chr_1 | g10402 | g10402.t10 | exon | g10402.t10.exon5 | 9562753 | 9562962 |
| chr_1 | g10402 | g10402.t10 | exon | g10402.t10.exon6 | 9563098 | 9563160 |
| chr_1 | g10402 | g10402.t10 | exon | g10402.t10.exon7 | 9564967 | 9564971 |
| chr_1 | g10402 | g10402.t10 | TSS | g10402.t10 | 9565889 | 9565889 |
Sequences
>g10402.t10 Gene=g10402 Length=1030
TCTCGGTGAAAATGAATGAATTGGACGCCTTAAGACAAGAAGCTGAAACATTAAAAAATG
CTATTCGTGATGCACGGAAAGCAGCATGCGACACCAGCCTCGTGCAGGCAACGAATAATC
TGGAACCAATTGGTCGCATTCAAATGCGTACCAGACGCACATTGCGTGGTCATTTAGCAA
AAATTTATGCTATGCACTGGGGAAGTGATTCGAGAAATTTAGTGTCAGCATCTCAAGATG
GAAAATTGATTGTCTGGGATTCACATACAACAAACAAGGTACACGCAATACCTCTACGTA
GTTCTTGGGTTATGACATGCGCGTATGCACCATCCGGCAGTTTTGTTGCATGTGGCGGTT
TGGATAATATCTGTTCAATATATAGCTTAAAGACTAGAGAAGGAAATGTGCGTGTATCAC
GTGAACTGCCTGGCCATACTGGCTACTTATCTTGTTGTCGATTCTTGGATGATAATCAGT
AACAAGTTCAGGAGATATGTCATGCGGATTATGGGATATAGAGACGGGCCAGCAATGTAC
ATCGTTTTTGGGACATACTGGTGATGTAATGGCGCTGTCATTGTCACCGCATTGTAGAGC
GTTCGTTTCAGGAGCTTGCGATGCTTCAGCTAAATTATGGGACATTCGAGAAGGTCAATG
CAAGCAAACCTTCCCTGGTCATGAAAGTGATATTAACGCCGTAACATTCTTTCCCAATGG
CTATGCATTTGCAACTGGTTCAGATGATGCCACTTGCCGTCTTTTTGATATCCGTGCCGA
TCAGGAATTGGCAATGTATTCACATGATAACATCATTTGTGGTATAACATCTGTTGCATT
TTCAAAATCTGGACGTCTTTTATTGGCCGGCTATGATGATTTCAATTGCAATGTATGGGA
TACTATGAAAGCTGAACGAGCTGGTATCTTGGCCGGCCACGATAACCGCGTATCATGTCT
AGGAGTTACAGAAAACGGCATGGCTGTAGCAACAGGGTCGTGGGATTCATTTTTACGTGT
ATGGAACTAA
>g10402.t10 Gene=g10402 Length=177
MSCGLWDIETGQQCTSFLGHTGDVMALSLSPHCRAFVSGACDASAKLWDIREGQCKQTFP
GHESDINAVTFFPNGYAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGR
LLLAGYDDFNCNVWDTMKAERAGILAGHDNRVSCLGVTENGMAVATGSWDSFLRVWN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g10402.t10 | CDD | cd00200 | WD40 | 2 | 177 | 6.5002E-55 |
| 11 | g10402.t10 | Gene3D | G3DSA:2.130.10.10 | - | 1 | 177 | 1.6E-75 |
| 5 | g10402.t10 | PANTHER | PTHR19850:SF28 | GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-4 | 2 | 177 | 3.6E-105 |
| 6 | g10402.t10 | PANTHER | PTHR19850 | GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA | 2 | 177 | 3.6E-105 |
| 8 | g10402.t10 | PRINTS | PR00320 | G protein beta WD-40 repeat signature | 36 | 50 | 2.8E-5 |
| 7 | g10402.t10 | PRINTS | PR00320 | G protein beta WD-40 repeat signature | 78 | 92 | 2.8E-5 |
| 9 | g10402.t10 | PRINTS | PR00320 | G protein beta WD-40 repeat signature | 164 | 177 | 2.8E-5 |
| 1 | g10402.t10 | Pfam | PF00400 | WD domain, G-beta repeat | 13 | 49 | 0.0091 |
| 4 | g10402.t10 | Pfam | PF00400 | WD domain, G-beta repeat | 53 | 91 | 6.6E-8 |
| 3 | g10402.t10 | Pfam | PF00400 | WD domain, G-beta repeat | 102 | 135 | 3.2E-5 |
| 2 | g10402.t10 | Pfam | PF00400 | WD domain, G-beta repeat | 144 | 177 | 7.6E-4 |
| 13 | g10402.t10 | ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 122 | 136 | - |
| 18 | g10402.t10 | ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1 | 177 | 40.234 |
| 21 | g10402.t10 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 17 | 58 | 14.184 |
| 20 | g10402.t10 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 59 | 100 | 12.848 |
| 19 | g10402.t10 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 110 | 144 | 8.771 |
| 22 | g10402.t10 | ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 177 | 14.452 |
| 16 | g10402.t10 | SMART | SM00320 | WD40_4 | 10 | 49 | 3.5E-6 |
| 17 | g10402.t10 | SMART | SM00320 | WD40_4 | 52 | 91 | 1.7E-9 |
| 14 | g10402.t10 | SMART | SM00320 | WD40_4 | 94 | 135 | 9.7E-4 |
| 15 | g10402.t10 | SMART | SM00320 | WD40_4 | 138 | 177 | 1.1E-4 |
| 10 | g10402.t10 | SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 177 | 1.59E-47 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
