Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Dolichol kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10402 g10402.t19 isoform g10402.t19 9567301 9568734
chr_1 g10402 g10402.t19 exon g10402.t19.exon1 9567301 9568179
chr_1 g10402 g10402.t19 cds g10402.t19.CDS1 9567301 9568134
chr_1 g10402 g10402.t19 exon g10402.t19.exon2 9568256 9568600
chr_1 g10402 g10402.t19 exon g10402.t19.exon3 9568664 9568734
chr_1 g10402 g10402.t19 TSS g10402.t19 NA NA
chr_1 g10402 g10402.t19 TTS g10402.t19 NA NA

Sequences

>g10402.t19 Gene=g10402 Length=1295
ATGGCAGAAGAAAGATTAACATTTTTGAAAAAGATGGATATAAGATGCAAATCTAGTAAT
ATAATATTTAGAAATAACTCGTATGGACTTTGGTTGAGTTCGCTTTTATTTTTATCTTAT
CTACAGACAATTTTGCGAAATCCGTATACAATTCAACTGGAATATGAACTTATTACCGTA
CTAATTGCTGGAATGATGCTTCAATCAATTGAAATATTTATTAGTTTCGTTTATATTGAT
CAACTAAACATATTAAAATTTCTAATGAAAATTTTTCCGACAATCGTCATTACAACTATT
TTCAACTTGATACTCAACCAAGATATGATATTCAGCTTATTTACAAGCTCAACCGTTATG
TTGATCTATTATTTATTGCTAATGTATACACTGAAATCAATGCCACGCTGTTTTACAATC
AAGTGACAACAATATCAAATCAACTCAACATAATTTTACAAATGGGACTTTTAGATGTGC
TCTTTCTTATAATTACAACTCATTTCATTCCTGTATTTCGGAAATGGTACCTATTCTATC
CACTCTTATTATTTTTAATAATAACACTCTGCTTGACGTTAGTGAATGGTGAGAGTGCAG
CTGTCATTTTATGGAATTTTGTATTTAGCGATATCGAAAGAAGTGCCATAGTTGTGGGAT
ATACAATTTTTCTTATATTAGCTGCGTATACAATATGGATTCAAATCAAAAAGAATCAAA
GAGGTTCAACAGCAACACGAAAAATATTTCATGTGCTCATCGTTCTTGTTTACTTGCCAG
GATTAATGCGTCAATGCTATTTTCTTTATGTAGCATCAGTTGTAATCCTAGCAATTTTAA
TAATAATTGAATTAGCTCGAGTGATTAAATTATATCCTATCGCTGAAATATTAGATGCAG
CTGTTGTTGCCTTCATTGATGAACAAGATTCTGGAAATATTGCATTGACACCGATTTATC
TCCTCATTGGATGCTCTATACCTTTATGGATTCATAATTCACCTTGTGACATGACTAATT
CAAGTGGTTCTGAACTTCTACCATTGCTTGCGGGAATTTTATCGATTGGAATTGGCGATA
CATTTGCTAGTGCAATAGGATCGAAAATCGGAAGACATAAATGGAGTAAAAATTCACAAA
AATCTGTTGAAGGAACACTTGCAAGTATTTTTGCTCAAGGAATATTTATTTATGGTTTAT
GTACACTGCAGTTTTTAAATTTAAGTACAAGACTGATGATCATATGTGGAGTAGCTGTGA
TTTCAAATGCTCTCATTGAGGCATTTACTCTTCAA

>g10402.t19 Gene=g10402 Length=278
MGLLDVLFLIITTHFIPVFRKWYLFYPLLLFLIITLCLTLVNGESAAVILWNFVFSDIER
SAIVVGYTIFLILAAYTIWIQIKKNQRGSTATRKIFHVLIVLVYLPGLMRQCYFLYVASV
VILAILIIIELARVIKLYPIAEILDAAVVAFIDEQDSGNIALTPIYLLIGCSIPLWIHNS
PCDMTNSSGSELLPLLAGILSIGIGDTFASAIGSKIGRHKWSKNSQKSVEGTLASIFAQG
IFIYGLCTLQFLNLSTRLMIICGVAVISNALIEAFTLQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
1 g10402.t19 PANTHER PTHR13205 TRANSMEMBRANE PROTEIN 15-RELATED 23 277 1.3E-60
2 g10402.t19 PANTHER PTHR13205:SF15 DOLICHOL KINASE 23 277 1.3E-60
14 g10402.t19 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 22 -
25 g10402.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 23 41 -
18 g10402.t19 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 42 60 -
20 g10402.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 61 79 -
11 g10402.t19 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 80 90 -
22 g10402.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 91 107 -
17 g10402.t19 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 108 112 -
19 g10402.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 113 132 -
10 g10402.t19 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 133 159 -
23 g10402.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 160 177 -
15 g10402.t19 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 178 191 -
24 g10402.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 192 212 -
13 g10402.t19 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 213 232 -
26 g10402.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 233 252 -
16 g10402.t19 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 253 257 -
21 g10402.t19 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 258 277 -
12 g10402.t19 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 278 278 -
7 g10402.t19 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 21 43 -
9 g10402.t19 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 58 80 -
4 g10402.t19 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 113 135 -
3 g10402.t19 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 160 179 -
6 g10402.t19 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 192 214 -
5 g10402.t19 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 229 251 -
8 g10402.t19 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 258 277 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0004168 dolichol kinase activity MF
GO:0043048 dolichyl monophosphate biosynthetic process BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed