Gene loci information

Transcript annotation

  • This transcript has been annotated as Guanine nucleotide-binding protein subunit beta-1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10402 g10402.t6 TTS g10402.t6 9561301 9561301
chr_1 g10402 g10402.t6 isoform g10402.t6 9561446 9562117
chr_1 g10402 g10402.t6 exon g10402.t6.exon1 9561446 9561552
chr_1 g10402 g10402.t6 cds g10402.t6.CDS1 9561446 9561552
chr_1 g10402 g10402.t6 exon g10402.t6.exon2 9561621 9561837
chr_1 g10402 g10402.t6 cds g10402.t6.CDS2 9561621 9561837
chr_1 g10402 g10402.t6 exon g10402.t6.exon3 9561906 9562117
chr_1 g10402 g10402.t6 cds g10402.t6.CDS3 9561906 9562109
chr_1 g10402 g10402.t6 TSS g10402.t6 NA NA

Sequences

>g10402.t6 Gene=g10402 Length=536
CAGGAGATATGTCATGCGGATTATGGGATATAGAGACGGGCCAGCAATGTACATCGTTTT
TGGGACATACTGGTGATGTAATGGCGCTGTCATTGTCACCGCATTGTAGAGCGTTCGTTT
CAGGAGCTTGCGATGCTTCAGCTAAATTATGGGACATTCGAGAAGGTCAATGCAAGCAAA
CCTTCCCTGGTCATGAAAGTGATATTAACGCCTTCTTTCCCAATGGCTATGCATTTGCAA
CTGGTTCAGATGATGCCACTTGCCGTCTTTTTGATATCCGTGCCGATCAGGAATTGGCAA
TGTATTCACATGATAACATCATTTGTGGTATAACATCTGTTGCATTTTCAAAATCTGGAC
GTCTTTTATTGGCCGGCTATGATGATTTCAATTGCAATGTATGGGATACTATGAAAGCTG
AACGAGCTGGTATCTTGGCCGGCCACGATAACCGCGTATCATGTCTAGGAGTTACAGAAA
ACGGCATGGCTGTAGCAACAGGGTCGTGGGATTCATTTTTACGTGTATGGAACTAA

>g10402.t6 Gene=g10402 Length=175
MSCGLWDIETGQQCTSFLGHTGDVMALSLSPHCRAFVSGACDASAKLWDIREGQCKQTFP
GHESDINAFFPNGYAFATGSDDATCRLFDIRADQELAMYSHDNIICGITSVAFSKSGRLL
LAGYDDFNCNVWDTMKAERAGILAGHDNRVSCLGVTENGMAVATGSWDSFLRVWN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g10402.t6 CDD cd00200 WD40 2 175 2.58895E-52
11 g10402.t6 Gene3D G3DSA:2.130.10.10 - 1 175 1.2E-72
5 g10402.t6 PANTHER PTHR19850:SF29 GUANINE NUCLEOTIDE-BINDING PROTEIN G(I)/G(S)/G(T) SUBUNIT BETA-1 2 175 3.5E-102
6 g10402.t6 PANTHER PTHR19850 GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 2 175 3.5E-102
8 g10402.t6 PRINTS PR00320 G protein beta WD-40 repeat signature 36 50 2.8E-5
9 g10402.t6 PRINTS PR00320 G protein beta WD-40 repeat signature 76 90 2.8E-5
7 g10402.t6 PRINTS PR00320 G protein beta WD-40 repeat signature 162 175 2.8E-5
2 g10402.t6 Pfam PF00400 WD domain, G-beta repeat 13 49 0.009
1 g10402.t6 Pfam PF00400 WD domain, G-beta repeat 53 89 8.1E-6
4 g10402.t6 Pfam PF00400 WD domain, G-beta repeat 100 133 3.2E-5
3 g10402.t6 Pfam PF00400 WD domain, G-beta repeat 142 175 7.5E-4
13 g10402.t6 ProSitePatterns PS00678 Trp-Asp (WD) repeats signature. 120 134 -
18 g10402.t6 ProSiteProfiles PS50294 Trp-Asp (WD) repeats circular profile. 1 175 35.383
20 g10402.t6 ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 17 58 14.184
19 g10402.t6 ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 108 142 8.771
21 g10402.t6 ProSiteProfiles PS50082 Trp-Asp (WD) repeats profile. 143 175 14.452
16 g10402.t6 SMART SM00320 WD40_4 10 49 3.5E-6
15 g10402.t6 SMART SM00320 WD40_4 52 89 9.6E-6
17 g10402.t6 SMART SM00320 WD40_4 92 133 9.7E-4
14 g10402.t6 SMART SM00320 WD40_4 136 175 1.1E-4
10 g10402.t6 SUPERFAMILY SSF50978 WD40 repeat-like 3 175 5.01E-44

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007165 signal transduction BP
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed