General information for g10412.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Protein kinase shaggy.
Parent gene
- The parent gene g10412 is located on chr_1: 9630341..9632561 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10412 | g10412.t4 | TSS | g10412.t4 | 9627941 | 9627941 |
| chr_1 | g10412 | g10412.t4 | isoform | g10412.t4 | 9628794 | 9632561 |
| chr_1 | g10412 | g10412.t4 | exon | g10412.t4.exon1 | 9628794 | 9628984 |
| chr_1 | g10412 | g10412.t4 | exon | g10412.t4.exon2 | 9629048 | 9629131 |
| chr_1 | g10412 | g10412.t4 | cds | g10412.t4.CDS1 | 9629066 | 9629131 |
| chr_1 | g10412 | g10412.t4 | exon | g10412.t4.exon3 | 9629850 | 9629960 |
| chr_1 | g10412 | g10412.t4 | cds | g10412.t4.CDS2 | 9629850 | 9629960 |
| chr_1 | g10412 | g10412.t4 | exon | g10412.t4.exon4 | 9630025 | 9630262 |
| chr_1 | g10412 | g10412.t4 | cds | g10412.t4.CDS3 | 9630025 | 9630262 |
| chr_1 | g10412 | g10412.t4 | exon | g10412.t4.exon5 | 9630340 | 9630533 |
| chr_1 | g10412 | g10412.t4 | cds | g10412.t4.CDS4 | 9630340 | 9630533 |
| chr_1 | g10412 | g10412.t4 | exon | g10412.t4.exon6 | 9631747 | 9631937 |
| chr_1 | g10412 | g10412.t4 | cds | g10412.t4.CDS5 | 9631747 | 9631937 |
| chr_1 | g10412 | g10412.t4 | exon | g10412.t4.exon7 | 9631999 | 9632561 |
| chr_1 | g10412 | g10412.t4 | cds | g10412.t4.CDS6 | 9631999 | 9632053 |
| chr_1 | g10412 | g10412.t4 | TTS | g10412.t4 | 9633459 | 9633459 |
Sequences
>g10412.t4 Gene=g10412 Length=1572
GTAAAGATGGTTCAAAAGTGACGACAGTGGTCGCAACGCCTGGTCAAGGACCAGATAGAC
CTCAAGAAGTTTCCTACTCGGACACCAAAGTCATTGGAAATGGGAGTTTCGGTGTTGTTT
TTCAAGCCAAACTTTGTGACACCGGCGAATTAGTTGCCATTAAAAAAGTTTTACAGGACA
AGAGATTCAAGAATCGTGAATTACAAATTATGAGACGATTGGAGCACTGTAATATCGTAA
AGTTAAAGTACTTTTTCTACTCAAGTGGTGAAAAGAAGGACGAAGTCTATTTAAATTTAG
TGCTCGAATATATTCCAGAGACCGTCTATAAAGTAGCACGCCAATATGCAAAAAATAAAC
AAACGATACCAATTAACTTTATCAGACTTTATATGTACCAATTGTTCAGAAGTCTCGCAT
ACATACACTCGTTGGGCATTTGTCATCGCGATATAAAACCTCAAAATTTGTTGTTGGATC
CCGAAACGGCTGTGTTAAAATTATGTGACTTTGGTAGCGCAAAACAATTGCTGCAAGGTG
AACCAAATGTTTCATATATATGCTCGCGATATTATCGCGCGCCTGAACTCATTTTCGGTG
CAATTAATTACACGACAAAAATTGATGTTTGGAGTGCAGGTTGCGTGTTAGCAGAACTTC
TCCTCGGTCAACCAATTTTCCCGGGTGATTCAGGCGTTGATCAGTTGGTTGAAATCATAA
AAGTATTGGGTACACCAACGAGGGATCAAATAAAAGAAATGAATCCTAATTACACTGAAT
TTAAATTCCCGCAAATTAAAAGTCACCCATGGCAAAAGGTGTTCAGAGTACGTACACCTC
CTGAGGCAATCGCATTAGTGTCACGTTTATTGGAATATACACCCGGTGCAAGAATAACAC
CGCTACAAGCTTGTGCACATCCATTTTTCAATGAACTTCGAGAGGGCAACAAAGTTTTAC
CAAACGGTCGTGAATTTCCACCTTTGTTTAACTTCACTGAGCAAGGTTTAATTAGCAATA
CAACCATCACTGAATGCAAGTTTGAGCCCACGCAATCCAAATGATGCTCCAGTCGGTGGA
CAATCATCATCAAGTGGTGAGCAACAACAGCAACCAACGCAACCAACTGATACGGTTGCA
ACTGCAGCTGCCGACTCAACTGTAAAATCAGATGCGCAAGCCACTCAAGTCTCAGCATCG
TCAATGGGTTAGCTAAAATTAAAATTAGATGAATTTCATTTAACCGATGAACATAAAAAA
GCTATCGTCGATAATTGTTTATAGAATGAATAATAAAATAACTACTGCAGAGAATAAAAA
AATTAAAAAAAAAAAACAAAAAGTTATGGAAAAATATTAATTTAAAATTATGTGAAAAAA
AATGGTAAAAAACTTTCTCTCTATATATAGAAAAGGAAACAAACAAAAAAATTATGAAAA
AAAAAAAACAATTTAATATCTTTCTATCACAATGCACTTATCACCGCAGATTCTCACTTA
TCTATTTCTTTTTGTTTGCGATAAAAGTATTTGATGGCACCACAACCAAAACTTGGGTGT
AATAGAAGAAAT
>g10412.t4 Gene=g10412 Length=284
MRRLEHCNIVKLKYFFYSSGEKKDEVYLNLVLEYIPETVYKVARQYAKNKQTIPINFIRL
YMYQLFRSLAYIHSLGICHRDIKPQNLLLDPETAVLKLCDFGSAKQLLQGEPNVSYICSR
YYRAPELIFGAINYTTKIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTRDQ
IKEMNPNYTEFKFPQIKSHPWQKVFRVRTPPEAIALVSRLLEYTPGARITPLQACAHPFF
NELREGNKVLPNGREFPPLFNFTEQGLISNTTITECKFEPTQSK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10412.t4 | CDD | cd14137 | STKc_GSK3 | 1 | 243 | 0.0 |
| 5 | g10412.t4 | Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 36 | 2.2E-11 |
| 6 | g10412.t4 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 37 | 280 | 5.2E-80 |
| 2 | g10412.t4 | PANTHER | PTHR24057 | GLYCOGEN SYNTHASE KINASE-3 ALPHA | 1 | 268 | 2.1E-173 |
| 3 | g10412.t4 | PANTHER | PTHR24057:SF14 | GLYCOGEN SYNTHASE KINASE-3 ALPHA | 1 | 268 | 2.1E-173 |
| 1 | g10412.t4 | Pfam | PF00069 | Protein kinase domain | 1 | 240 | 7.0E-56 |
| 8 | g10412.t4 | ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 77 | 89 | - |
| 10 | g10412.t4 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 240 | 36.16 |
| 9 | g10412.t4 | SMART | SM00220 | serkin_6 | 1 | 240 | 5.5E-51 |
| 4 | g10412.t4 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 267 | 3.46E-73 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
