General information for g10417.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Ankyrin-2.
Parent gene
- The parent gene g10417 is located on chr_1: 9693931..9722924 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10417 | g10417.t2 | isoform | g10417.t2 | 9693931 | 9722924 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon1 | 9693931 | 9694014 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS1 | 9693931 | 9694014 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon2 | 9698838 | 9698939 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS2 | 9698838 | 9698939 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon3 | 9699355 | 9699807 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS3 | 9699355 | 9699807 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon4 | 9699867 | 9700631 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS4 | 9699867 | 9700631 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon5 | 9700695 | 9700898 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS5 | 9700695 | 9700898 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon6 | 9702136 | 9702879 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS6 | 9702136 | 9702879 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon7 | 9702939 | 9703116 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS7 | 9702939 | 9703116 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon8 | 9703790 | 9704075 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS8 | 9703790 | 9704075 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon9 | 9704575 | 9704960 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS9 | 9704575 | 9704960 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon10 | 9705027 | 9705238 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS10 | 9705027 | 9705238 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon11 | 9707645 | 9707849 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS11 | 9707645 | 9707849 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon12 | 9711388 | 9711547 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS12 | 9711388 | 9711547 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon13 | 9711604 | 9713426 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS13 | 9711604 | 9713426 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon14 | 9713492 | 9713566 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS14 | 9713492 | 9713566 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon15 | 9718418 | 9720721 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS15 | 9718418 | 9720721 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon16 | 9720789 | 9720980 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS16 | 9720789 | 9720980 |
| chr_1 | g10417 | g10417.t2 | exon | g10417.t2.exon17 | 9722557 | 9722924 |
| chr_1 | g10417 | g10417.t2 | cds | g10417.t2.CDS17 | 9722557 | 9722924 |
| chr_1 | g10417 | g10417.t2 | TSS | g10417.t2 | NA | NA |
| chr_1 | g10417 | g10417.t2 | TTS | g10417.t2 | NA | NA |
Sequences
>g10417.t2 Gene=g10417 Length=8541
ATGTCTGAAACATCAACTCAACAAAAGCGACAACTGGAGAAGGAACGACAAGTCCGCCAA
GCTAAACTGCAAAACGAAGATGAGTCTGATAGCAACACATCATTTTTACGCGCAGCTCGT
GCAGGAAATCTTGAAAAAGTTTTAGAGCATCTTAAGAACAATATTGATATTAATACATGC
AATGCTAATGGCTTAAACGCATTGCATTTGGCATCAAAAGATGGACACATTTCAGTCGTG
TCTGAATTGCTTAGTCGCGGTGCACTTGTCGATGCAGCTACAAAGAAAGGCAACACTGCG
CTTCATATTGCATCGCTGGCAGGACAAGAGGAAGTAGTGAAACTTTTAATACAACATAAT
GCATCAGTCAATGTGCAATCACAGAATGGTTTCACACCATTATATATGGCAGCACAAGAA
AATCATGATAGTGTTGTCAAGTTATTACTGGCAAATGGTGCTAATCAGAGTCTCGCTACT
GAAGATGGATTTACACCTCTTGCAGTCGCTATGCAACAAGGTCATGACAAAGTCGTAGCC
GTACTCCTTGAAAGTGACACACGTGGAAAAGTTCGTTTACCAGCTCTTCATATTGCCGCT
AAAAAGGATGATGTTAAAGCAGCAACATTATTGCTTGAAAACGATCATAATCCAGATGTA
ACATCCAAATCAGGATTTACACCATTACATATTGCATCACATTATGGCAACGAAGGCATT
GCTAATCTGTTGATTCAAAAAGGAGCTGATGTCAACTATGCCGCTAAACATAGCATCACA
CCGCTCCATGTAGCTGCCAAATGGGGCAAAACTAACATGGTCGCATTGCTTTTAGAGAAA
GGTGCAAACATCGAAAGCAAAACTCGTGATGGCTTAACACCATTACATTGTGCAGCTCGA
TCAGGTCATGAGCAAGTTGTTGACTTACTCTTGGAACGTGGTGCACCGATTAGCTCGAAA
ACCAAGAATGGACTTGCAGCTTTACATATGGCAGCACAAGGCGAGCATGTTGATGCAGCT
AGAATTTTATTATACCATCGTGCACCAGTCGATGAAGTCACAGTTGATTACTTGACCGCT
CTTCATGTCGCTGCTCATTGTGGTCATGTGAGAGTCGCTAAATTATTACTCGACCGCAAT
GCTGATGCAAATGCTCGAGCTCTAAATGGTTTCACTCCATTGCACATTGCTTGCAAAAAG
AATCGTATTAAAGTAGTCGAATTGTTGTTGAAACATGGCGCAAGTATTGGAGCAACAACT
GAAAGTGGTCTTACTCCACTCCATGTCGCATCATTTATGGGCTGCATGAACATTGTCATC
TATTTATTGCAACACGAAGCTAGTCCCGATGTCCCAACTGTACGCGGGGAAACTCCATTA
CATTTGGCTGCCAGAGCTAATCAGACTGACATCATTCGCATTCTTCTCCGTAATGGTGCA
CAAGTTGATGCTCGTGCACGTGAACAACAAACACCACTTCACATTGCATCACGACTTGGC
AATGTTGACATTGTTATGTTGCTACTTCAACATGGCGCTCAGGTCGATGCAGTCACAAAG
GATATGTATACAGCACTTCACATTGCGGCCAAAGAAGGACAAGATGAGGTCGCTGCTGTG
TTGCTTGAAAATGGCGCTCAGATTGATGCCACGACAAAGAAAGGTTTCACACCCTTACAT
TTGACAGCTAAATATGGCAACATTAAAGTTGCACAGCTTTTATTATCCAAGGACGCTCCA
GTCGACGCTCAGGGCAAGAACGGAGTAACTCCTTTGCATGTTGCAAGTCATTACGATCAT
CAGAATGTTGCTTTGCTGTTACTTGAAAAAGGAGCTAGTCCTCATGCAACTGCCAAGAAT
GGACACACACCGTTGCATATTGCTGCACGTAAAAACCAAATGGACATTGCCACGACATTA
TTGGAATATGGAGCACAAGCTAATGCTGAAAGCAAAGCTGGATTTACTCCATTGCATTTG
AGTGCACAGGAAGGTCATACTGATATGTCAAGTTTGCTTTTGGAGCACAAAGCAGATGCC
GATCATCAAGCTCGTAATGGTCTTACTGCTTTACATCTTTGTGCACAAGAAGATAAGGTT
CAAGTTGCGCAGATTCTGGTCAAGCATGGTGCAAATATTGAGGCACAAACTAAAGCCAAT
TATACACCACTTCATGTCGCATCTCATTTTGGACAAGTCAACATGGTTCGTTATCTTATT
GAACAAGGTGCACAACCAAATGTTGCTACAGGCATTGGCTATACACCATTGCATCAAGCT
GCTCAGCAAGGACATTTACATATTGTTCAAGTTTTGGTCGAGAATAAAGCCGATCCAAAT
ATTACTACTTCGAATGGACAAACTGCCCTTCATATTGCCCAAAAATTGGGTTACATCAGC
GTTTTTGATTCATTGAAACCAGTTACTGACACAGAAGCTGCAATGTCAACATCGATTACT
GATGAGAAATACCGTGTTGTTGCACCAGAAGCAATGCATGAAACATTCATGTCTGATTCA
GAAGAAGAAGGTGAAGATACTGCATTGTCTGATCAACCATACCGATATTTGACAGTCGAT
GAGATGAAATCATTGGGTGATGATTCTCTTCCTATTGATGTTACTCGTGATGAACGTATT
GATAACAAGATGGTTACATCGACTGAATCAGCTAAACCACCGCAAGCTCTTGAAGATTCT
ATTAGTCCACAACACATCTCTGTTATGGATCAATCAGCTGTTTCTGAAAGAACAGTTACT
GACTATGCAGCAAATGCCGATAACATTGTCATTGATCGTCATCCTCAACATGTTGGCTTC
TTGGTATCATTCCTCGTTGATGCACGCGGCGGTGCCATGAGGGGATGTCGTCATAGTGGA
GTTCGTATTATTGTGCCAGCACGTTCCGCTGCTCAACCGACAAGAATCACATGTCGCTAT
GTTAAACCTCAGCGTACCATGCATCCACCACCGCTTATGGAAGGCGAAGCATTGGCAAGT
CGTGTTCTTGAACTCGGACCAGTTGGAGCTAAATTCCTTGGACCTGTCATTATGGAAGTT
CCACATTTTGCATCATTGCGTGGAAAGGAACGTGAAATTGTCATTTTAAGATCAGACAAT
GGTGAAACATGGCGTGAACATACAATCGAAAATTCTGATGAAATCATTAGTGAAGTCTTG
AATGATTGTCTTGAGCCTGAAGATATCGCTCAAATGGATGAATTAGGTGGAGGACGAATT
TGTCGTTTTGTTACATACGACTTTCCACAATATTTTGCTGTCATTTCGCGAATTCATCAA
GAAGTTCATGCTATTGGACCTGAAGGTGGAATGGTTTCAAGCACAGTTGTGCCACAAGTT
CAAGCCGTTTTCCCACAAGGCGCTCTTACAAAGAAAATTAAAGTCGGATTGCAGGCACAA
CCAATTGATCCTGATTTAACTGCCAAATTATTGGGTCGTGGTGTAGCAGTGTCACCTGTT
GTGACTGTTGAGCCACGTCGTCGCAAGTTCCACAAGGCAATAACCTTGAGTATTCCAACA
CCACGTGCTCACAGTCAAGGAATGATCAATCAATACTCTGGCAATGCTCCTACGTTGCGT
CTCTTATGCTCTATTACAGGTGGAACAACGCGAGCACAATGGGAAGATGTTACAGGCTCA
ACTCCGCTTACATTTGTCAATGATTGTGTTTCATTTACCACCACTGTATCAGCTCGATTT
TGGTTGATGGATTGTCGTAATATTGCTGATGCCACTAAAATGGCTACTGAACTTTACAAG
GAAGCTATTCATGTACCATTCATGGCAAAATTCGTTGTTTTCGCTAAACGTGTTGATCCA
ATGGAAGCACGTTTACGTGTCTTCTGCATGACTGATGATCGCGAAGATAAAACTCTTGAA
CAACAAGAGAACTTCACAGAAGTCGCAAAGAGTCGCGATGTTGAAGTTCTTGAAAATAAA
ATTCAATATCTAGAGTTGGCAGGAAATCTCATTCCAGTGACTAAATCTGGCGATCAATTA
CAATTTCCCTTCAAAGCATTCAGAGAAAATCGCTTACCTTTCTCAGTACGCGTTAAAGAT
CAGCATGCTGATACTGTTGGTCGTGCTCTGTTCATGCGTGAGCCAAAAGTTGCTAAGGGT
GAACAACCACAATCACCAATATGTATTCTCAATATTGTCTTACCTGAAGATATCATACCT
GAACAAATCTCTATACTTGATAGCAGCCAAGAAGTCATTTCTCGTCTTGAATTATCTTCA
CACCTCCGCAAATATCCAGAAGAATATAGCCGACTCAGCACTGATTTGCGTATGAGCGAT
GTCTCAAACTTTTTGGGAGACGATTGGATACGACTTGCACCTGAAATTGGTGTCAATGAG
CAGGAAGTAGAGAATATTATTGAAGATTACCCCAATAGCACTGCGCAACAGGCACAAGCA
ATGCTAAGACTCTTCCAGAGCAAAAAGCAAAATGACCTCAACATTCTTGAAAATGGATTA
CGAGCGATTGGTCGTGATGACATTGTAGAACGTTGCCTGATTCGCACAACCACTACGACT
GTAACTAAACGACATCCAAAGCGCACAAGTGATACCAATGGATATGAAGAAGGTGATTTA
ATAAAAGATTCAGAATCACTTGAAGATTTGAATAAGAAACGCTACGCCCGCTATGAACAT
GATGAAAGTAAATATTCTGCTGAAGAGAAAGCCGTTGAATCAGATGAAGATGAAGCAGTA
AAGCGATCAGTGGCTGAACGACGAGAGAAAATTCAAAAGAGACTGTCTGGTGAACAAAAG
TTTGTTCCATCGACACAACAAAAGGAAATTGTTGAAGAAATCATTACAATCAAGCGTCAG
AGTTTAATTGAAGACAAAGTGGCACAACATGAAGATGAAATTATTATGCAGAAGCCAGTT
GATAACACTTACAAATCTGCTGCTGTTCCCGAGCAAGTGATGAAACTTAAGACTACAACT
CATCACTCAACAGCTGTCGATAAACATGAATTTGAGAAGGAACTTCAAGACAAATTCTCA
AAAACTCTTGGTGATGTTGAGAAATTCGAACATAAATATACTCATGAAGCTATCCCTACC
ACACAAGATTTTCTTGCTTCTGAGATCCAACAGTCAAGTGTATTAAGAGATTTGCCCGAG
AAAACAGTTACAACTGTCACAAAAACAACAACAATGACAGAATCAAGCGATCATGATACA
AATGGACGTCAAGAATCACCAGTTGTAAAGAAGCGTGAAGTTATTACCACAACAACAACA
TATACAAATGAAGATGGAGTAACAAAACAAACAAAGACACAAGAAGTTTATAGCGATGAT
GATTTTGAAAGAATCGAACGTGACGTTATGGATCCAAGTGTTGTTGACGATATTCTTGAA
GAGGCACGTCAAAAAGCTGATTCATTGCAGAGTACAGTCACCACAACAAAGACAACAGTT
CATCCTGGTGAAACCAAAGAAACCATTACCACGACTACGACTATTCGAACGATCGAAAGT
ATCAATTTGGACGATGTAAGTGATGAACATCGACAGTATTCAGACGACGAAGAAGTGATT
CAAAAGAAGTCTGTTGAATCTGTACATAAGACCTCAACTCCACCACCTACTCCACATGAT
TTTGATGGACGTTCAGGCGAAGTTCAGCAATTACCGGATGATGCTGCTAAAAGACCGTCC
GTTGAAAAAATTGATAAGAAATATTTGGCAGCAGCTGAGGAAGATTTTGAAGAGGAAATT
GAGGAAAATGACGACGTTGAGGAGGAGGAAGAACAAACACAAGAAAAAATCAAAGTATCA
AAGGTACGAACGCAACAATCACAAAGTCAAACTTTTACAGAAACCAAAACAACTGCAACA
TCGAAAAAGGATATTAATTTACGTCTGGAAACACTACAAAAAACTACTCAAGATAAATCA
AAAATTCCAAAAATTGATGAAAGTCCATTGACTGATTCTGACTACGTTGAATCGCCTGAC
TCTTCGTTTAAATCGTCTCGTAAAGATTCACCAAAAGTGAAATTACTTATTGGAAGAAAA
GAAATCAAAACAAATGAAACTTCAGCTATAACAGAAAGCACATTGACTGTTTATGGTACA
CAAGATGTTGACATAAAAATTAGTTCAGAGTCAAGCATTAGTGTAACTACCACACAAGAA
AAAGAAAAGGAAACAATTGGTGACCTCAAAGATACACCGCGTAAATATAAACGTTATACA
ATTATTGAAGATGACGTTTTAAATGAGGAAGATGATTTTAATCGTGCTGATCGTAAACGT
GAAGATAGTGTTGCATTTGCTACTAAAAAGAGCATTCATTTGTATGGTAGTTTTGATTCA
AATGCAGATTCACCTGCTACAGATTCGCCAGCATCACATTACGTAACTGATACTGGAATA
TCTTTGACACGTGGCTTTACTGAAACAACAAGTCCGGGTTTAGAATCTCATTCTGAAAAG
GATCCAAAGAAGCCAATTGTTGACACACTTGATGTTGAAACAGAAGAAATGGAATTGACT
GATGCCGGTTTGAGTCCAATTCAAGCTGACGATGCTGATATGCTAAATCAAGCATTCCAA
CTTGCATCGGAAGAAGAAACACATTATATTAATACTGCTACAAGCCCTGTTGAATTTGAA
GAAACTTCAGAAAAACATGACACCTCTGAAGCGGCAACAATAACTGATAAAATTGAAACT
AAAGATGCATCGTCAAGTCCATTAGAGGAGAATGTAGCTTTATCAGTCAGTGAAATGCCA
GAAATTACTGATGAAGAATTTTTAACAACACGTCGTTTGACAAATGAAGTAAAAACTAAA
GTTAAAATTATTGAAGAACAAAGCTCAAAGATCCCAACTATAAAACGTCGAGTTGATTTT
GAAGAACCTCCAAAAATTGATGAATATTTGAATGAAAAAAGTGAAACTAAACCACTGTCA
GAAATAAAGAAAAAGTTTTCACCAGAAAAGGAAATCGATGATGAACCTTCAATATCTTCT
GAACCTACGCCACCAGTACACGAAGTCATTCAGAAAATTGAAAAACAAATTTCTGTAGAG
GGAGGAAAGAAGATTCCACAACCTGAGTCAGGCATTTCTCATCGCTACATTTCTAAAGAT
GAAAAACTTACAAGTGAAGACACTTTGGATGATGTAGAGTCACAAATTGTCCAAGAAGAA
GATATGCGTCCAATTGTGAAGAAAGTTGAAAAAAGAAATATTGTTAGCGGTTTCAAAGCT
GATCCATATTATATTGATTCTGAAAATTTAGAGGGAATTCATGAACCAGTTTTTGAAAAG
AAAATTACAAAGAAACATGTTAGTGATTTAACTGATGAAACATGTATTGAGGAGCCTCAA
ATACCAAAAGTATCAGAATCAATTGCAGCTATTGAAAGCAAATTAAAAGAAGTTCGAGGT
GATTTAGAGTCGACTAAAACAAAATCACAACAAAATGAAGAAAATAAAATGCAACTTGAT
AAAACTTTTGACATACTTTCACCATCAGACTCTGAAAAAATTGATAAAACAGTTGCAGAA
AAAGTCAGTATTATTGAAAAACGATTGTCTGATGAAGAAGAGATTAAAGATACTGTAAGA
GATTTAGTGAAAACCACAACTACTGTAGTAACTTCAAAAGTAATAAAACATACGTATACA
AAAGAAGTAGAAAAAGACAATAAATTATTAGATTTTGAAACACATAGCACTGAATCAAAA
ATGGAACTTTCACCTAGAATAGATATTTCACCGGAGAAAGCTAAAGAATCCTTCGACACT
ATGGTGCAATTAAAACAAATAACACATGAAGAAATAATTATAATGCCTAAAAATCCAAAT
GAAACAGCAAAAGAGCCAAAAGAAAAAGAGCATTTTACAGAAAAAGTTCCAGCTGAAACA
AAAATCATTAAAGCAAAATCACGTACTCCATCACCTTCTAAAGATGACAAGATCTTGCCA
AATTTGAAGGAAGAATTTAGACCTTCTGCACCTGAAATTCAAGAAATTGATTCACTTAAA
ACAATAACTCAAAGAGAATTTGTCACAGGCTTTACTAAACAAGAAAAAGTTATTCATGAA
GTTACAACAGTCATCAAAGAGCATGTTGAAAAGTCTCTATTTGACGAGCCAAAGAAGGAG
AACCATTGTCTGTATGACAAGATCTTGCCAAGTGATGATACAAAGCATGTCGAACCTGAA
AAACTTTTGACAAAAGATGAGTCATCCAAACCTAAAGATTTGAAAGAAAAATCACGTACT
CCATCACCTTCTAAAGATGACAAGATCTTGCCAAGTGATGATACAAAGCATGTCGAACCT
GAAAAACTTTTGACAAAAGATGAGTCATCTAAACCTAAAGATTTGAAAGAAAAATCACGT
ACTCCATCACCTTCTAAAGATGACAAGATCTTGCCAAGTGATGACACAAAGCATGTCGAA
CCTGAAAAACTTTTGACAAAAGATGAGTCATCCAAACCTAAAGATTTGAAAAGAAAAATC
ACATACTCCATCATCTTCTAA
>g10417.t2 Gene=g10417 Length=2846
MSETSTQQKRQLEKERQVRQAKLQNEDESDSNTSFLRAARAGNLEKVLEHLKNNIDINTC
NANGLNALHLASKDGHISVVSELLSRGALVDAATKKGNTALHIASLAGQEEVVKLLIQHN
ASVNVQSQNGFTPLYMAAQENHDSVVKLLLANGANQSLATEDGFTPLAVAMQQGHDKVVA
VLLESDTRGKVRLPALHIAAKKDDVKAATLLLENDHNPDVTSKSGFTPLHIASHYGNEGI
ANLLIQKGADVNYAAKHSITPLHVAAKWGKTNMVALLLEKGANIESKTRDGLTPLHCAAR
SGHEQVVDLLLERGAPISSKTKNGLAALHMAAQGEHVDAARILLYHRAPVDEVTVDYLTA
LHVAAHCGHVRVAKLLLDRNADANARALNGFTPLHIACKKNRIKVVELLLKHGASIGATT
ESGLTPLHVASFMGCMNIVIYLLQHEASPDVPTVRGETPLHLAARANQTDIIRILLRNGA
QVDARAREQQTPLHIASRLGNVDIVMLLLQHGAQVDAVTKDMYTALHIAAKEGQDEVAAV
LLENGAQIDATTKKGFTPLHLTAKYGNIKVAQLLLSKDAPVDAQGKNGVTPLHVASHYDH
QNVALLLLEKGASPHATAKNGHTPLHIAARKNQMDIATTLLEYGAQANAESKAGFTPLHL
SAQEGHTDMSSLLLEHKADADHQARNGLTALHLCAQEDKVQVAQILVKHGANIEAQTKAN
YTPLHVASHFGQVNMVRYLIEQGAQPNVATGIGYTPLHQAAQQGHLHIVQVLVENKADPN
ITTSNGQTALHIAQKLGYISVFDSLKPVTDTEAAMSTSITDEKYRVVAPEAMHETFMSDS
EEEGEDTALSDQPYRYLTVDEMKSLGDDSLPIDVTRDERIDNKMVTSTESAKPPQALEDS
ISPQHISVMDQSAVSERTVTDYAANADNIVIDRHPQHVGFLVSFLVDARGGAMRGCRHSG
VRIIVPARSAAQPTRITCRYVKPQRTMHPPPLMEGEALASRVLELGPVGAKFLGPVIMEV
PHFASLRGKEREIVILRSDNGETWREHTIENSDEIISEVLNDCLEPEDIAQMDELGGGRI
CRFVTYDFPQYFAVISRIHQEVHAIGPEGGMVSSTVVPQVQAVFPQGALTKKIKVGLQAQ
PIDPDLTAKLLGRGVAVSPVVTVEPRRRKFHKAITLSIPTPRAHSQGMINQYSGNAPTLR
LLCSITGGTTRAQWEDVTGSTPLTFVNDCVSFTTTVSARFWLMDCRNIADATKMATELYK
EAIHVPFMAKFVVFAKRVDPMEARLRVFCMTDDREDKTLEQQENFTEVAKSRDVEVLENK
IQYLELAGNLIPVTKSGDQLQFPFKAFRENRLPFSVRVKDQHADTVGRALFMREPKVAKG
EQPQSPICILNIVLPEDIIPEQISILDSSQEVISRLELSSHLRKYPEEYSRLSTDLRMSD
VSNFLGDDWIRLAPEIGVNEQEVENIIEDYPNSTAQQAQAMLRLFQSKKQNDLNILENGL
RAIGRDDIVERCLIRTTTTTVTKRHPKRTSDTNGYEEGDLIKDSESLEDLNKKRYARYEH
DESKYSAEEKAVESDEDEAVKRSVAERREKIQKRLSGEQKFVPSTQQKEIVEEIITIKRQ
SLIEDKVAQHEDEIIMQKPVDNTYKSAAVPEQVMKLKTTTHHSTAVDKHEFEKELQDKFS
KTLGDVEKFEHKYTHEAIPTTQDFLASEIQQSSVLRDLPEKTVTTVTKTTTMTESSDHDT
NGRQESPVVKKREVITTTTTYTNEDGVTKQTKTQEVYSDDDFERIERDVMDPSVVDDILE
EARQKADSLQSTVTTTKTTVHPGETKETITTTTTIRTIESINLDDVSDEHRQYSDDEEVI
QKKSVESVHKTSTPPPTPHDFDGRSGEVQQLPDDAAKRPSVEKIDKKYLAAAEEDFEEEI
EENDDVEEEEEQTQEKIKVSKVRTQQSQSQTFTETKTTATSKKDINLRLETLQKTTQDKS
KIPKIDESPLTDSDYVESPDSSFKSSRKDSPKVKLLIGRKEIKTNETSAITESTLTVYGT
QDVDIKISSESSISVTTTQEKEKETIGDLKDTPRKYKRYTIIEDDVLNEEDDFNRADRKR
EDSVAFATKKSIHLYGSFDSNADSPATDSPASHYVTDTGISLTRGFTETTSPGLESHSEK
DPKKPIVDTLDVETEEMELTDAGLSPIQADDADMLNQAFQLASEEETHYINTATSPVEFE
ETSEKHDTSEAATITDKIETKDASSSPLEENVALSVSEMPEITDEEFLTTRRLTNEVKTK
VKIIEEQSSKIPTIKRRVDFEEPPKIDEYLNEKSETKPLSEIKKKFSPEKEIDDEPSISS
EPTPPVHEVIQKIEKQISVEGGKKIPQPESGISHRYISKDEKLTSEDTLDDVESQIVQEE
DMRPIVKKVEKRNIVSGFKADPYYIDSENLEGIHEPVFEKKITKKHVSDLTDETCIEEPQ
IPKVSESIAAIESKLKEVRGDLESTKTKSQQNEENKMQLDKTFDILSPSDSEKIDKTVAE
KVSIIEKRLSDEEEIKDTVRDLVKTTTTVVTSKVIKHTYTKEVEKDNKLLDFETHSTESK
MELSPRIDISPEKAKESFDTMVQLKQITHEEIIIMPKNPNETAKEPKEKEHFTEKVPAET
KIIKAKSRTPSPSKDDKILPNLKEEFRPSAPEIQEIDSLKTITQREFVTGFTKQEKVIHE
VTTVIKEHVEKSLFDEPKKENHCLYDKILPSDDTKHVEPEKLLTKDESSKPKDLKEKSRT
PSPSKDDKILPSDDTKHVEPEKLLTKDESSKPKDLKEKSRTPSPSKDDKILPSDDTKHVE
PEKLLTKDESSKPKDLKRKITYSIIF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 33 | g10417.t2 | CDD | cd08317 | Death_ank | 1434 | 1512 | 3.08081E-30 |
| 31 | g10417.t2 | Coils | Coil | Coil | 9 | 29 | - |
| 30 | g10417.t2 | Coils | Coil | Coil | 1799 | 1819 | - |
| 32 | g10417.t2 | Coils | Coil | Coil | 1909 | 1943 | - |
| 29 | g10417.t2 | Coils | Coil | Coil | 2468 | 2488 | - |
| 23 | g10417.t2 | Gene3D | G3DSA:1.25.40.20 | - | 2 | 309 | 3.5E-104 |
| 22 | g10417.t2 | Gene3D | G3DSA:1.25.40.20 | - | 310 | 417 | 4.0E-31 |
| 24 | g10417.t2 | Gene3D | G3DSA:1.25.40.20 | - | 418 | 849 | 7.1E-141 |
| 28 | g10417.t2 | Gene3D | G3DSA:2.60.220.30 | - | 936 | 1096 | 9.4E-70 |
| 27 | g10417.t2 | Gene3D | G3DSA:2.60.220.30 | - | 1097 | 1262 | 3.0E-83 |
| 25 | g10417.t2 | Gene3D | G3DSA:2.60.40.2660 | - | 1263 | 1422 | 6.5E-66 |
| 26 | g10417.t2 | Gene3D | G3DSA:1.10.533.10 | Death Domain | 1426 | 1515 | 1.6E-15 |
| 60 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - |
| 68 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 26 | - |
| 69 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1523 | 1543 | - |
| 73 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1524 | 1543 | - |
| 75 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1728 | 1747 | - |
| 63 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1844 | 1865 | - |
| 72 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1844 | 2011 | - |
| 74 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1896 | 1913 | - |
| 65 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1914 | 1931 | - |
| 71 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1939 | 1960 | - |
| 64 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1961 | 1991 | - |
| 61 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2220 | 2237 | - |
| 62 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2220 | 2257 | - |
| 70 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2238 | 2252 | - |
| 59 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2320 | 2345 | - |
| 66 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2320 | 2337 | - |
| 67 | g10417.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2711 | 2836 | - |
| 14 | g10417.t2 | PANTHER | PTHR24133:SF36 | ANKYRIN-2 | 24 | 1426 | 0.0 |
| 15 | g10417.t2 | PANTHER | PTHR24133 | - | 24 | 1426 | 0.0 |
| 17 | g10417.t2 | PRINTS | PR01415 | Ankyrin repeat signature | 291 | 306 | 9.0E-7 |
| 16 | g10417.t2 | PRINTS | PR01415 | Ankyrin repeat signature | 405 | 419 | 9.0E-7 |
| 8 | g10417.t2 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 37 | 126 | 1.6E-14 |
| 5 | g10417.t2 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 128 | 185 | 1.5E-9 |
| 4 | g10417.t2 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 194 | 252 | 2.5E-9 |
| 9 | g10417.t2 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 259 | 320 | 5.5E-13 |
| 11 | g10417.t2 | Pfam | PF13857 | Ankyrin repeats (many copies) | 376 | 430 | 4.6E-13 |
| 7 | g10417.t2 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 455 | 517 | 9.0E-13 |
| 3 | g10417.t2 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 526 | 617 | 6.4E-16 |
| 6 | g10417.t2 | Pfam | PF12796 | Ankyrin repeats (3 copies) | 619 | 682 | 1.2E-10 |
| 12 | g10417.t2 | Pfam | PF00023 | Ankyrin repeat | 686 | 717 | 1.7E-5 |
| 10 | g10417.t2 | Pfam | PF13857 | Ankyrin repeats (many copies) | 739 | 793 | 1.9E-12 |
| 2 | g10417.t2 | Pfam | PF00791 | ZU5 domain | 942 | 1039 | 2.1E-27 |
| 13 | g10417.t2 | Pfam | PF17809 | UPA domain | 1265 | 1396 | 1.9E-56 |
| 1 | g10417.t2 | Pfam | PF00531 | Death domain | 1439 | 1511 | 1.5E-12 |
| 76 | g10417.t2 | ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 30 | 805 | 248.245 |
| 78 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 63 | 95 | 12.396 |
| 97 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 96 | 128 | 14.052 |
| 84 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 129 | 161 | 13.037 |
| 91 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 162 | 184 | 8.763 |
| 90 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 224 | 256 | 14.025 |
| 86 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 257 | 289 | 13.411 |
| 95 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 290 | 322 | 14.826 |
| 82 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 323 | 355 | 9.244 |
| 92 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 356 | 388 | 11.514 |
| 85 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 389 | 421 | 14.345 |
| 81 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 422 | 454 | 10.205 |
| 83 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 455 | 487 | 15.2 |
| 87 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 488 | 520 | 13.945 |
| 80 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 521 | 553 | 12.77 |
| 96 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 554 | 586 | 12.529 |
| 79 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 587 | 619 | 12.129 |
| 94 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 620 | 652 | 14.452 |
| 77 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 653 | 685 | 12.102 |
| 89 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 686 | 718 | 12.449 |
| 93 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 719 | 751 | 12.583 |
| 88 | g10417.t2 | ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 752 | 784 | 13.411 |
| 99 | g10417.t2 | ProSiteProfiles | PS51145 | ZU5 domain profile. | 940 | 1097 | 20.597 |
| 100 | g10417.t2 | ProSiteProfiles | PS51145 | ZU5 domain profile. | 1099 | 1246 | 13.143 |
| 98 | g10417.t2 | ProSiteProfiles | PS50017 | Death domain profile. | 1434 | 1510 | 17.031 |
| 57 | g10417.t2 | SMART | SM00248 | ANK_2a | 30 | 59 | 670.0 |
| 54 | g10417.t2 | SMART | SM00248 | ANK_2a | 63 | 92 | 4.9E-4 |
| 45 | g10417.t2 | SMART | SM00248 | ANK_2a | 96 | 125 | 7.6E-7 |
| 56 | g10417.t2 | SMART | SM00248 | ANK_2a | 129 | 158 | 1.9E-5 |
| 42 | g10417.t2 | SMART | SM00248 | ANK_2a | 162 | 190 | 55.0 |
| 51 | g10417.t2 | SMART | SM00248 | ANK_2a | 191 | 220 | 20.0 |
| 35 | g10417.t2 | SMART | SM00248 | ANK_2a | 224 | 253 | 1.6E-6 |
| 41 | g10417.t2 | SMART | SM00248 | ANK_2a | 257 | 286 | 5.1E-5 |
| 40 | g10417.t2 | SMART | SM00248 | ANK_2a | 290 | 319 | 2.0E-6 |
| 46 | g10417.t2 | SMART | SM00248 | ANK_2a | 323 | 352 | 0.28 |
| 39 | g10417.t2 | SMART | SM00248 | ANK_2a | 356 | 385 | 5.6E-5 |
| 48 | g10417.t2 | SMART | SM00248 | ANK_2a | 389 | 418 | 1.6E-7 |
| 55 | g10417.t2 | SMART | SM00248 | ANK_2a | 422 | 451 | 0.0024 |
| 38 | g10417.t2 | SMART | SM00248 | ANK_2a | 455 | 484 | 8.6E-6 |
| 43 | g10417.t2 | SMART | SM00248 | ANK_2a | 488 | 517 | 1.0E-4 |
| 37 | g10417.t2 | SMART | SM00248 | ANK_2a | 521 | 550 | 6.3E-4 |
| 47 | g10417.t2 | SMART | SM00248 | ANK_2a | 554 | 583 | 1.1E-4 |
| 52 | g10417.t2 | SMART | SM00248 | ANK_2a | 587 | 616 | 4.6E-4 |
| 44 | g10417.t2 | SMART | SM00248 | ANK_2a | 620 | 649 | 4.9E-5 |
| 49 | g10417.t2 | SMART | SM00248 | ANK_2a | 653 | 682 | 0.0038 |
| 36 | g10417.t2 | SMART | SM00248 | ANK_2a | 686 | 715 | 1.2E-4 |
| 50 | g10417.t2 | SMART | SM00248 | ANK_2a | 719 | 748 | 1.2E-4 |
| 53 | g10417.t2 | SMART | SM00248 | ANK_2a | 752 | 781 | 7.7E-6 |
| 58 | g10417.t2 | SMART | SM00218 | zu_1 | 938 | 1042 | 6.4E-58 |
| 34 | g10417.t2 | SMART | SM00005 | DEATH_4 | 1424 | 1518 | 5.9E-5 |
| 19 | g10417.t2 | SUPERFAMILY | SSF48403 | Ankyrin repeat | 26 | 245 | 2.21E-54 |
| 20 | g10417.t2 | SUPERFAMILY | SSF48403 | Ankyrin repeat | 194 | 445 | 7.78E-75 |
| 18 | g10417.t2 | SUPERFAMILY | SSF48403 | Ankyrin repeat | 424 | 817 | 7.58E-131 |
| 21 | g10417.t2 | SUPERFAMILY | SSF47986 | DEATH domain | 1430 | 1513 | 9.42E-16 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0007165 | signal transduction | BP |
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K10380 (ankyrin)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
