General information for g10430.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exocyst complex component 4.
Parent gene
- The parent gene g10430 is located on chr_1: 9757318..9758518 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10430 | g10430.t1 | TSS | g10430.t1 | 9755028 | 9755028 |
| chr_1 | g10430 | g10430.t1 | isoform | g10430.t1 | 9755114 | 9758518 |
| chr_1 | g10430 | g10430.t1 | exon | g10430.t1.exon1 | 9755114 | 9755185 |
| chr_1 | g10430 | g10430.t1 | cds | g10430.t1.CDS1 | 9755114 | 9755185 |
| chr_1 | g10430 | g10430.t1 | exon | g10430.t1.exon2 | 9755259 | 9755429 |
| chr_1 | g10430 | g10430.t1 | cds | g10430.t1.CDS2 | 9755259 | 9755429 |
| chr_1 | g10430 | g10430.t1 | exon | g10430.t1.exon3 | 9755494 | 9755750 |
| chr_1 | g10430 | g10430.t1 | cds | g10430.t1.CDS3 | 9755494 | 9755750 |
| chr_1 | g10430 | g10430.t1 | exon | g10430.t1.exon4 | 9755812 | 9757780 |
| chr_1 | g10430 | g10430.t1 | cds | g10430.t1.CDS4 | 9755812 | 9757780 |
| chr_1 | g10430 | g10430.t1 | exon | g10430.t1.exon5 | 9757835 | 9758008 |
| chr_1 | g10430 | g10430.t1 | cds | g10430.t1.CDS5 | 9757835 | 9758008 |
| chr_1 | g10430 | g10430.t1 | exon | g10430.t1.exon6 | 9758071 | 9758328 |
| chr_1 | g10430 | g10430.t1 | cds | g10430.t1.CDS6 | 9758071 | 9758328 |
| chr_1 | g10430 | g10430.t1 | exon | g10430.t1.exon7 | 9758390 | 9758518 |
| chr_1 | g10430 | g10430.t1 | cds | g10430.t1.CDS7 | 9758390 | 9758518 |
| chr_1 | g10430 | g10430.t1 | TTS | g10430.t1 | 9758711 | 9758711 |
Sequences
>g10430.t1 Gene=g10430 Length=3030
ATGAGTCGCTATCCAGAGCAGTATTCGCCTACTCCTCGAAAGCCTCCACGTGGAAAATAT
GCTCGGGATGCATATTCCACATCATCTTCGAGTAATCTTTTAATGTCAGTGATAAAAACA
CTGGATGCAAGTGAAAATAATGAGGAACGAGAACGTGAGAAATTAAAAATAGAAAAAGAG
TTTAAGAAATCCGATAAGAGATTAGCTGAACTAGTTGGCGCTCATGACTCTGAATTAACT
CAAACTATGCAACTCTTCTCAAAAATATCAACAGAAGTTGACTTTTCACGAGATAAAATT
CGTACAGTAAGAGAAAATTTACAGACTTGTAAGCAATTGCTTCGATGTAGACGCGAAGAG
CTAAAGAAACTTTATACAGATGCTGTGAAAAATAAGCATGTAATGCAATATTTAGATCAT
ATCAATGAGCTGCGTAATGTCAATTCAACAAAATTTAATGCAAGTCTACAACGACGGCAT
TATTTAAAAGCAACTAAAATGCTTATGAACGCAATAGAAATATCAGAAAATCAGCTAAAA
GATGTCGAAGGTCTAGAAGATTTGCGACAAGATTTTGAAAACAAAAAAGTTCATCTTTAT
ACAAAGCTTGTGGAAGAAATGAATAAACATATATATCATTCCAGCACTACAGAGGTGCTT
ACTAATTTTCAACGCAACAATTCAGCACGTATAAGTTCCAATCACATACAAGCACCATTT
CAACGCAATACAATGAGGAAATCTGCTGATCGCATAGAAGCCAATAATAAAGCGAAAAAG
GCATTACAAGAAATCAATCAAAATGGATATGTGGATCATGATTTAGAGATAATAGATGAC
ATTTCTTTACTTGATCCAGATATCAATTCTACTTATTTTATTGGTATAATTGTTGAATGT
TTTGCATTGTTACATAAAGTGCCTGATTCTGTTGAGACAATGAAAGTTCAGATGCAATTT
GAGCTACTTGCAATAGTTGAAAAGACTACTTCTTACATTCTTGACTTGCGTCAACGTACT
ACCGGAGGTCCGAAATCGTTGTTAGAAAATGGCGAAACAAATGGATTATTAAATGATGTT
CCTTTCTTAGAGTTACTAGATTTGTTGTTTAAACAATTTCAACTGATTGCAGAAGCTCAT
CAATTGACATTAAAAAATTATAATAATGTCATTAAAAGATATCAAGCGAATGTCAAACCA
TATGATTTGACAGATTTTTGGGGACAAGTGCAAGCAGTGCTTCAACTTTTATTAACTGAC
TATTTAGATATACAAAATACTGGCGATGATGAACTGAGAATAAGTTTTCCCGAGCAGCAA
GTAAATATTAATACATTCTTTAGTCGTCGCAAGAATATATCTAAAAAGACACTCTTTCGA
TTTGATAAATCTTCACATACAACAGACATTGTTAGCTCTAATACACTTGAAATTGAACAT
CGTGGACATGTAAGAAATTTATCTACTGTATCATCATCTTCTGCAAAAGACATTATTACT
TCAATAAGTAGTAAGAAACGACGTGAAAAATTATTCGTATGCAAACCAGATCCATCTCTT
ATAAGAAAGATTTTTATTCCTATGCTAGCATATATTCACACTATAGAGAGTAATGCAAAT
ATGAAAAAGAATGGACAAGTATCAAGTCTGCATGACTTTCTTACAACTTATGTTAAAGAG
TCTTATTTATCACGTGGACATAATAGAAATCTTTCAATGACAATTGAATCGCTATCAAAA
TCACAAGATGCATGGAAAGCAATAATTAGTGCTGAAGAGATGAAAAAATTGGGAGTGAGC
AGACCTCTTTTGCAATCATGTCGTGTTGTTGAAAATTTGATAGTAGAAACAAAAAATTTG
ATTCAAGATTTGCCATTATATCATGAGGATCTTCTTAAAAATGTTTGTGCATTGTTAAAC
ACATATAGAGAGACTTGTCAAGCAGCATATCGCGGAATAGTACAACCAGAAACTGAGGAT
AAGAGAATCTATAGTGTTACGTGGTTAAAAGACGAAGATATTAGTCGATTTCTCAAGACT
TTACCAAATTATCTTGACCTCAAAACAGCAAATGCAAAATCCAGACGTGGAAAATTAAAA
AATGAAATGTCCGAAGAAGATAGTCCAACTCAAATTCAACAACGTAATATTCGTGAAGCT
GAAATGCTAACAAGTAATTTAGGTGATGGAGGCATTTCTCAACATGAAATTTTAAGTGAC
ATTGGAGTGCTGAAAGAACTTGCGATTCTACAGGAAAGCATGGAATGGTTTGCATATCGA
ATCAATGAATTTGCTAATGACCTCAGAAAGCCTATTACATGTACATCAAAGAATGCAAAT
GTTTCGACATTACCTACTGAATTGACTCAACCAATTATTATTAGAGACGGTACAATTAAG
GTGCTAACAAATTTAGCTTTAGGTTTTGATGAATTGGCAAATACCTGCTTGTTGGTGCTT
CATTTAGAGGTTCGTGTGCAATGCTTCCATTATTTACGATCAAATTCATCGGATAAGTTT
AAGGACAATAATCCTAATAAAAACAATACTCTTGAACCCGATACTAAAGTACTAAAATTA
ACTAAAGTTTTGTCAGATCTTGATGAGGCATTTTCATCAACTTTACATCCACGAAAGACA
AAATATATTTTTGAAGGCTTAGCGCATCTTGTTGCAAGGATACTCATTATGACGTCAAAT
TCGATGGAATCATTAGATAATCATTCAATACAACAGATGATTAGAAATAGTCTTGCTTTA
CAGCAAACACTCAGCTCAATTACTGCACAGCGAGAACAGTTTCTTGATCATGCAAGAAAT
TATTATGAAATGCTTTATAAAGAACCTGATGACATTCTCAAAGATATTACTGAGAAGGGC
CCAAAATATAGTGAACTTCAGTATTTACAAGCTTTGAAGCTTATTTGTCAAGGCCGAGTG
AATGAAAATGGAGAAAATTTGCTTACAATTTACCAACAAAAGTTAAATCATATATTAGGA
ACAAAACAACCAAGTGGCATTCAAGTTTAA
>g10430.t1 Gene=g10430 Length=1009
MSRYPEQYSPTPRKPPRGKYARDAYSTSSSSNLLMSVIKTLDASENNEEREREKLKIEKE
FKKSDKRLAELVGAHDSELTQTMQLFSKISTEVDFSRDKIRTVRENLQTCKQLLRCRREE
LKKLYTDAVKNKHVMQYLDHINELRNVNSTKFNASLQRRHYLKATKMLMNAIEISENQLK
DVEGLEDLRQDFENKKVHLYTKLVEEMNKHIYHSSTTEVLTNFQRNNSARISSNHIQAPF
QRNTMRKSADRIEANNKAKKALQEINQNGYVDHDLEIIDDISLLDPDINSTYFIGIIVEC
FALLHKVPDSVETMKVQMQFELLAIVEKTTSYILDLRQRTTGGPKSLLENGETNGLLNDV
PFLELLDLLFKQFQLIAEAHQLTLKNYNNVIKRYQANVKPYDLTDFWGQVQAVLQLLLTD
YLDIQNTGDDELRISFPEQQVNINTFFSRRKNISKKTLFRFDKSSHTTDIVSSNTLEIEH
RGHVRNLSTVSSSSAKDIITSISSKKRREKLFVCKPDPSLIRKIFIPMLAYIHTIESNAN
MKKNGQVSSLHDFLTTYVKESYLSRGHNRNLSMTIESLSKSQDAWKAIISAEEMKKLGVS
RPLLQSCRVVENLIVETKNLIQDLPLYHEDLLKNVCALLNTYRETCQAAYRGIVQPETED
KRIYSVTWLKDEDISRFLKTLPNYLDLKTANAKSRRGKLKNEMSEEDSPTQIQQRNIREA
EMLTSNLGDGGISQHEILSDIGVLKELAILQESMEWFAYRINEFANDLRKPITCTSKNAN
VSTLPTELTQPIIIRDGTIKVLTNLALGFDELANTCLLVLHLEVRVQCFHYLRSNSSDKF
KDNNPNKNNTLEPDTKVLKLTKVLSDLDEAFSSTLHPRKTKYIFEGLAHLVARILIMTSN
SMESLDNHSIQQMIRNSLALQQTLSSITAQREQFLDHARNYYEMLYKEPDDILKDITEKG
PKYSELQYLQALKLICQGRVNENGENLLTIYQQKLNHILGTKQPSGIQV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g10430.t1 | Coils | Coil | Coil | 38 | 65 | - |
| 6 | g10430.t1 | Coils | Coil | Coil | 175 | 195 | - |
| 5 | g10430.t1 | Coils | Coil | Coil | 377 | 397 | - |
| 4 | g10430.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - |
| 2 | g10430.t1 | PANTHER | PTHR14146 | EXOCYST COMPLEX COMPONENT 4 | 25 | 1001 | 1.7E-193 |
| 3 | g10430.t1 | PANTHER | PTHR14146:SF0 | EXOCYST COMPLEX COMPONENT 4 | 25 | 1001 | 1.7E-193 |
| 1 | g10430.t1 | Pfam | PF04048 | Sec8 exocyst complex component specific domain | 34 | 149 | 5.8E-9 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000145 | exocyst | CC |
| GO:0006904 | vesicle docking involved in exocytosis | BP |
| GO:0090522 | vesicle tethering involved in exocytosis | BP |
KEGG
Orthology
- This transcript has been annotated with K06111 (exocyst complex component 4)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
