General information for g10430.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Exocyst complex component 4.
Parent gene
- The parent gene g10430 is located on chr_1: 9757318..9758518 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10430 | g10430.t2 | TSS | g10430.t2 | 9755028 | 9755028 |
| chr_1 | g10430 | g10430.t2 | isoform | g10430.t2 | 9755812 | 9756676 |
| chr_1 | g10430 | g10430.t2 | exon | g10430.t2.exon1 | 9755812 | 9756676 |
| chr_1 | g10430 | g10430.t2 | cds | g10430.t2.CDS1 | 9755816 | 9756676 |
| chr_1 | g10430 | g10430.t2 | TTS | g10430.t2 | NA | NA |
Sequences
>g10430.t2 Gene=g10430 Length=865
GCTTATGAACGCAATAGAAATATCAGAAAATCAGCTAAAAGATGTCGAAGGTCTAGAAGA
TTTGCGACAAGATTTTGAAAACAAAAAAGTTCATCTTTATACAAAGCTTGTGGAAGAAAT
GAATAAACATATATATCATTCCAGCACTACAGAGGTGCTTACTAATTTTCAACGCAACAA
TTCAGCACGTATAAGTTCCAATCACATACAAGCACCATTTCAACGCAATACAATGAGGAA
ATCTGCTGATCGCATAGAAGCCAATAATAAAGCGAAAAAGGCATTACAAGAAATCAATCA
AAATGGATATGTGGATCATGATTTAGAGATAATAGATGACATTTCTTTACTTGATCCAGA
TATCAATTCTACTTATTTTATTGGTATAATTGTTGAATGTTTTGCATTGTTACATAAAGT
GCCTGATTCTGTTGAGACAATGAAAGTTCAGATGCAATTTGAGCTACTTGCAATAGTTGA
AAAGACTACTTCTTACATTCTTGACTTGCGTCAACGTACTACCGGAGGTCCGAAATCGTT
GTTAGAAAATGGCGAAACAAATGGATTATTAAATGATGTTCCTTTCTTAGAGTTACTAGA
TTTGTTGTTTAAACAATTTCAACTGATTGCAGAAGCTCATCAATTGACATTAAAAAATTA
TAATAATGTCATTAAAAGATATCAAGCGAATGTCAAACCATATGATTTGACAGATTTTTG
GGGACAAGTGCAAGCAGTGCTTCAACTTTTATTAACTGACTATTTAGATATACAAAATAC
TGGCGATGATGAACTGAGAATAAGTTTTCCCGAGCAGCAAGTAAATATTAATACATTCTT
TAGTCGTCGCAAGAATATATCTAAA
>g10430.t2 Gene=g10430 Length=287
MNAIEISENQLKDVEGLEDLRQDFENKKVHLYTKLVEEMNKHIYHSSTTEVLTNFQRNNS
ARISSNHIQAPFQRNTMRKSADRIEANNKAKKALQEINQNGYVDHDLEIIDDISLLDPDI
NSTYFIGIIVECFALLHKVPDSVETMKVQMQFELLAIVEKTTSYILDLRQRTTGGPKSLL
ENGETNGLLNDVPFLELLDLLFKQFQLIAEAHQLTLKNYNNVIKRYQANVKPYDLTDFWG
QVQAVLQLLLTDYLDIQNTGDDELRISFPEQQVNINTFFSRRKNISK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10430.t2 | Coils | Coil | Coil | 7 | 27 | - |
| 3 | g10430.t2 | Coils | Coil | Coil | 209 | 229 | - |
| 1 | g10430.t2 | PANTHER | PTHR14146 | EXOCYST COMPLEX COMPONENT 4 | 5 | 259 | 8.4E-36 |
| 2 | g10430.t2 | PANTHER | PTHR14146:SF0 | EXOCYST COMPLEX COMPONENT 4 | 5 | 259 | 8.4E-36 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000145 | exocyst | CC |
| GO:0090522 | vesicle tethering involved in exocytosis | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
